Analysis of interatomic Contacts of Structural Units in PDB entry:
2V9P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2V9P entry

There are 12 chains in PDB entry 2V9P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 301	ASP 579
B	THR 301	ILE 578
C	THR 301	ILE 578
D	THR 301	ASP 579
E	THR 301	ILE 578
F	THR 301	ASP 579
G	THR 301	ILE 578
H	THR 301	ILE 578
I	THR 301	ASP 579
J	THR 301	LEU 577
K	THR 301	ASP 579
L	THR 301	ILE 578

There are178 helices in PDB entry 2V9P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	312	323	Right-handed alpha
Helix 2	2	A	327	338	Right-handed alpha
Helix 3	3	A	342	349	Right-handed alpha
Helix 4	4	A	353	376	Right-handed alpha
Helix 5	5	A	377	389	Right-handed alpha
Helix 6	6	A	395	405	Right-handed alpha
Helix 7	7	A	408	422	Right-handed alpha
Helix 8	8	A	438	451	Right-handed alpha
Helix 9	9	A	456	460	Right-handed 310
Helix 10	10	A	462	470	Right-handed 310
Helix 11	11	A	481	491	Right-handed alpha
Helix 12	12	A	493	498	Right-handed 310
Helix 13	13	A	529	536	Right-handed 310
Helix 14	14	A	560	571	Right-handed alpha
Helix 15	15	B	312	323	Right-handed alpha
Helix 16	16	B	327	339	Right-handed alpha
Helix 17	17	B	342	349	Right-handed alpha
Helix 18	18	B	353	376	Right-handed alpha
Helix 19	19	B	377	389	Right-handed alpha
Helix 20	20	B	394	405	Right-handed alpha
Helix 21	21	B	408	422	Right-handed alpha
Helix 22	22	B	438	451	Right-handed alpha
Helix 23	23	B	456	460	Right-handed 310
Helix 24	24	B	466	471	Right-handed 310
Helix 25	25	B	481	492	Right-handed alpha
Helix 26	26	B	492	498	Right-handed alpha
Helix 27	27	B	529	536	Right-handed 310
Helix 28	28	B	560	571	Right-handed alpha
Helix 29	29	C	312	323	Right-handed alpha
Helix 30	30	C	327	339	Right-handed alpha
Helix 31	31	C	342	351	Right-handed alpha
Helix 32	32	C	353	376	Right-handed alpha
Helix 33	33	C	377	389	Right-handed alpha
Helix 34	34	C	394	405	Right-handed alpha
Helix 35	35	C	408	422	Right-handed alpha
Helix 36	36	C	438	451	Right-handed alpha
Helix 37	37	C	456	460	Right-handed 310
Helix 38	38	C	466	471	Right-handed 310
Helix 39	39	C	481	492	Right-handed alpha
Helix 40	40	C	492	498	Right-handed alpha
Helix 41	41	C	525	529	Right-handed 310
Helix 42	42	C	529	539	Right-handed 310
Helix 43	43	C	560	571	Right-handed alpha
Helix 44	44	C	572	576	Right-handed 310
Helix 45	45	D	312	323	Right-handed alpha
Helix 46	46	D	327	339	Right-handed alpha
Helix 47	47	D	342	349	Right-handed alpha
Helix 48	48	D	353	376	Right-handed alpha
Helix 49	49	D	377	389	Right-handed alpha
Helix 50	50	D	394	405	Right-handed alpha
Helix 51	51	D	408	422	Right-handed alpha
Helix 52	52	D	438	451	Right-handed alpha
Helix 53	53	D	456	460	Right-handed 310
Helix 54	54	D	462	471	Right-handed 310
Helix 55	55	D	481	492	Right-handed alpha
Helix 56	56	D	492	497	Right-handed alpha
Helix 57	57	D	525	529	Right-handed 310
Helix 58	58	D	529	536	Right-handed 310
Helix 59	59	D	560	571	Right-handed alpha
Helix 60	60	E	312	323	Right-handed alpha
Helix 61	61	E	327	339	Right-handed alpha
Helix 62	62	E	342	351	Right-handed alpha
Helix 63	63	E	353	376	Right-handed alpha
Helix 64	64	E	377	389	Right-handed alpha
Helix 65	65	E	394	405	Right-handed alpha
Helix 66	66	E	408	421	Right-handed alpha
Helix 67	67	E	438	451	Right-handed alpha
Helix 68	68	E	456	462	Right-handed 310
Helix 69	69	E	462	471	Right-handed 310
Helix 70	70	E	481	492	Right-handed alpha
Helix 71	71	E	492	498	Right-handed alpha
Helix 72	72	E	529	536	Right-handed 310
Helix 73	73	E	560	572	Right-handed alpha
Helix 74	74	F	312	324	Right-handed alpha
Helix 75	75	F	327	338	Right-handed alpha
Helix 76	76	F	342	351	Right-handed alpha
Helix 77	77	F	353	375	Right-handed alpha
Helix 78	78	F	377	389	Right-handed alpha
Helix 79	79	F	395	405	Right-handed alpha
Helix 80	80	F	408	421	Right-handed alpha
Helix 81	81	F	438	451	Right-handed alpha
Helix 82	82	F	459	463	Right-handed 310
Helix 83	83	F	464	471	Right-handed 310
Helix 84	84	F	481	492	Right-handed alpha
Helix 85	85	F	492	498	Right-handed alpha
Helix 86	86	F	529	536	Right-handed 310
Helix 87	87	F	560	571	Right-handed alpha
Helix 88	88	F	572	576	Right-handed 310
Helix 89	89	G	312	324	Right-handed alpha
Helix 90	90	G	327	338	Right-handed alpha
Helix 91	91	G	342	351	Right-handed alpha
Helix 92	92	G	353	376	Right-handed alpha
Helix 93	93	G	377	389	Right-handed alpha
Helix 94	94	G	395	405	Right-handed alpha
Helix 95	95	G	408	422	Right-handed alpha
Helix 96	96	G	438	451	Right-handed alpha
Helix 97	97	G	456	460	Right-handed 310
Helix 98	98	G	462	470	Right-handed 310
Helix 99	99	G	481	491	Right-handed alpha
Helix 100	100	G	492	498	Right-handed alpha
Helix 101	101	G	525	529	Right-handed 310
Helix 102	102	G	529	536	Right-handed 310
Helix 103	103	G	560	572	Right-handed alpha
Helix 104	104	H	312	323	Right-handed alpha
Helix 105	105	H	327	339	Right-handed alpha
Helix 106	106	H	342	351	Right-handed alpha
Helix 107	107	H	353	376	Right-handed alpha
Helix 108	108	H	377	389	Right-handed alpha
Helix 109	109	H	394	405	Right-handed alpha
Helix 110	110	H	408	422	Right-handed alpha
Helix 111	111	H	438	451	Right-handed alpha
Helix 112	112	H	456	460	Right-handed 310
Helix 113	113	H	466	471	Right-handed 310
Helix 114	114	H	481	492	Right-handed alpha
Helix 115	115	H	492	497	Right-handed alpha
Helix 116	116	H	525	529	Right-handed 310
Helix 117	117	H	529	536	Right-handed 310
Helix 118	118	H	560	571	Right-handed alpha
Helix 119	119	I	312	323	Right-handed alpha
Helix 120	120	I	327	339	Right-handed alpha
Helix 121	121	I	342	351	Right-handed alpha
Helix 122	122	I	353	376	Right-handed alpha
Helix 123	123	I	377	389	Right-handed alpha
Helix 124	124	I	394	405	Right-handed alpha
Helix 125	125	I	408	422	Right-handed alpha
Helix 126	126	I	438	451	Right-handed alpha
Helix 127	127	I	456	460	Right-handed 310
Helix 128	128	I	466	471	Right-handed 310
Helix 129	129	I	481	492	Right-handed alpha
Helix 130	130	I	492	498	Right-handed alpha
Helix 131	131	I	525	529	Right-handed 310
Helix 132	132	I	529	539	Right-handed 310
Helix 133	133	I	560	571	Right-handed alpha
Helix 134	134	J	312	323	Right-handed alpha
Helix 135	135	J	327	339	Right-handed alpha
Helix 136	136	J	342	349	Right-handed alpha
Helix 137	137	J	353	376	Right-handed alpha
Helix 138	138	J	377	389	Right-handed alpha
Helix 139	139	J	394	405	Right-handed alpha
Helix 140	140	J	408	422	Right-handed alpha
Helix 141	141	J	438	451	Right-handed alpha
Helix 142	142	J	456	460	Right-handed 310
Helix 143	143	J	462	471	Right-handed 310
Helix 144	144	J	481	492	Right-handed alpha
Helix 145	145	J	492	498	Right-handed alpha
Helix 146	146	J	529	536	Right-handed 310
Helix 147	147	J	560	571	Right-handed alpha
Helix 148	148	J	572	576	Right-handed 310
Helix 149	149	K	312	323	Right-handed alpha
Helix 150	150	K	327	339	Right-handed alpha
Helix 151	151	K	342	351	Right-handed alpha
Helix 152	152	K	353	376	Right-handed alpha
Helix 153	153	K	377	389	Right-handed alpha
Helix 154	154	K	395	405	Right-handed alpha
Helix 155	155	K	408	421	Right-handed alpha
Helix 156	156	K	438	451	Right-handed alpha
Helix 157	157	K	456	462	Right-handed 310
Helix 158	158	K	462	471	Right-handed 310
Helix 159	159	K	481	492	Right-handed alpha
Helix 160	160	K	492	498	Right-handed alpha
Helix 161	161	K	529	531	Right-handed 310
Helix 162	162	K	532	537	Right-handed alpha
Helix 163	163	K	560	572	Right-handed alpha
Helix 164	164	L	312	324	Right-handed alpha
Helix 165	165	L	327	338	Right-handed alpha
Helix 166	166	L	342	351	Right-handed alpha
Helix 167	167	L	353	375	Right-handed alpha
Helix 168	168	L	377	388	Right-handed alpha
Helix 169	169	L	395	406	Right-handed alpha
Helix 170	170	L	408	421	Right-handed alpha
Helix 171	171	L	438	450	Right-handed alpha
Helix 172	172	L	459	463	Right-handed 310
Helix 173	173	L	464	471	Right-handed 310
Helix 174	174	L	481	492	Right-handed alpha
Helix 175	175	L	494	498	Right-handed 310
Helix 176	176	L	529	536	Right-handed 310
Helix 177	177	L	560	571	Right-handed alpha
Helix 178	178	L	572	576	Right-handed 310

There are 24 sheets in PDB entry 2V9P. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB, GA, GB, HA, HB, IA, IB, JA, JB, KA, KB, LA, LB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	455	first strand
Strand 2	A	475	480	parallel
Strand 3	A	518	522	parallel
Strand 4	A	428	432	parallel
Strand 5	A	539	543	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	502	first strand
Strand 2	A	512	513	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	475	477	parallel
Strand 3	B	518	522	parallel
Strand 4	B	428	432	parallel
Strand 5	B	540	543	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	503	first strand
Strand 2	B	511	514	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	455	first strand
Strand 2	C	475	477	parallel
Strand 3	C	518	522	parallel
Strand 4	C	428	432	parallel
Strand 5	C	540	543	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	500	503	first strand
Strand 2	C	511	514	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	455	first strand
Strand 2	D	475	477	parallel
Strand 3	D	518	522	parallel
Strand 4	D	428	432	parallel
Strand 5	D	540	543	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	500	503	first strand
Strand 2	D	511	514	anti-parallel

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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	455	first strand
Strand 2	E	475	480	parallel
Strand 3	E	518	522	parallel
Strand 4	E	428	432	parallel
Strand 5	E	540	543	parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	501	503	first strand
Strand 2	E	511	513	anti-parallel

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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	455	first strand
Strand 2	F	475	480	parallel
Strand 3	F	518	522	parallel
Strand 4	F	428	432	parallel
Strand 5	F	540	543	parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	501	503	first strand
Strand 2	F	511	513	anti-parallel

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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	453	455	first strand
Strand 2	G	475	480	parallel
Strand 3	G	518	522	parallel
Strand 4	G	428	432	parallel
Strand 5	G	539	543	parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	501	503	first strand
Strand 2	G	511	513	anti-parallel

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There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	453	455	first strand
Strand 2	H	475	477	parallel
Strand 3	H	518	522	parallel
Strand 4	H	428	432	parallel
Strand 5	H	540	543	parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	500	503	first strand
Strand 2	H	511	514	anti-parallel

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There are 5 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	453	455	first strand
Strand 2	I	475	477	parallel
Strand 3	I	518	522	parallel
Strand 4	I	428	432	parallel
Strand 5	I	540	543	parallel

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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	500	503	first strand
Strand 2	I	511	514	anti-parallel

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There are 5 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	453	455	first strand
Strand 2	J	475	477	parallel
Strand 3	J	518	522	parallel
Strand 4	J	428	432	parallel
Strand 5	J	540	543	parallel

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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	500	504	first strand
Strand 2	J	510	514	anti-parallel

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There are 5 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	455	first strand
Strand 2	K	475	477	parallel
Strand 3	K	518	522	parallel
Strand 4	K	428	432	parallel
Strand 5	K	540	543	parallel

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There are 2 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	501	503	first strand
Strand 2	K	511	513	anti-parallel

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There are 5 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	455	first strand
Strand 2	L	475	477	parallel
Strand 3	L	518	522	parallel
Strand 4	L	428	432	parallel
Strand 5	L	540	543	parallel

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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	501	503	first strand
Strand 2	L	511	513	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2V9P

Analysis of interatomic Contacts of Structural Units in PDB entry:
2V9P