Analysis of interatomic Contacts of Structural Units in PDB entry:
2V9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V9Y entry

There are 2 chains in PDB entry 2V9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 475LEU 792
B
 GLY 475MET 785
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2V9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
498 507Right-handed alpha
Helix 2
2
A
511 526Right-handed alpha
Helix 3
3
A
544 563Right-handed alpha
Helix 4
4
A
596 598Right-handed 310
Helix 5
5
A
601 605Right-handed 310
Helix 6
6
A
623 634Right-handed alpha
Helix 7
7
A
650 656Right-handed alpha
Helix 8
8
A
662 672Right-handed alpha
Helix 9
9
A
684 690Right-handed alpha
Helix 10
10
A
691 694Right-handed 310
Helix 11
11
A
705 707Right-handed 310
Helix 12
12
A
710 721Right-handed alpha
Helix 13
13
A
723 731Right-handed alpha
Helix 14
14
A
742 744Right-handed 310
Helix 15
15
A
745 756Right-handed alpha
Helix 16
16
A
780 786Right-handed alpha
Helix 17
17
B
498 507Right-handed alpha
Helix 18
18
B
511 526Right-handed alpha
Helix 19
19
B
544 563Right-handed alpha
Helix 20
20
B
596 598Right-handed 310
Helix 21
21
B
601 605Right-handed 310
Helix 22
22
B
623 634Right-handed alpha
Helix 23
23
B
650 657Right-handed alpha
Helix 24
24
B
666 671Right-handed alpha
Helix 25
25
B
684 690Right-handed alpha
Helix 26
26
B
691 694Right-handed 310
Helix 27
27
B
705 707Right-handed 310
Helix 28
28
B
710 721Right-handed alpha
Helix 29
29
B
723 731Right-handed alpha
Helix 30
30
B
742 744Right-handed 310
Helix 31
31
B
745 756Right-handed alpha
Helix 32
32
B
780 785Right-handed alpha
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There are 4 sheets in PDB entry 2V9Y. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 494first strand
Strand 2
A
583 594anti-parallel
Strand 3
A
530 540anti-parallel
Strand 4
A
565 573parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
677 680first strand
Strand 2
A
735 741anti-parallel
Strand 3
A
610 615anti-parallel
Strand 4
A
760 768anti-parallel
Strand 5
A
698 703anti-parallel
Strand 6
A
776 779parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
487 494first strand
Strand 2
B
583 594anti-parallel
Strand 3
B
530 540anti-parallel
Strand 4
B
565 573parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
677 680first strand
Strand 2
B
735 741anti-parallel
Strand 3
B
610 615anti-parallel
Strand 4
B
760 768anti-parallel
Strand 5
B
698 703anti-parallel
Strand 6
B
776 779parallel
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