Analysis of interatomic Contacts of Structural Units in PDB entry:
2V9Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V9Z entry

There is 1 chain in PDB entry 2V9Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3LEU 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 2V9Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 49Right-handed 310
Helix 2
2
A
51 56Right-handed alpha
Helix 3
3
A
81 95Right-handed alpha
Helix 4
4
A
107 118Right-handed alpha
Helix 5
5
A
119 121Right-handed 310
Helix 6
6
A
141 141Right-handed 310
Helix 7
7
A
141 153Right-handed alpha
Helix 8
8
A
157 163Right-handed alpha
Helix 9
9
A
166 171Right-handed alpha
Helix 10
10
A
171 176Right-handed alpha
Helix 11
11
A
182 191Right-handed alpha
Helix 12
12
A
192 194Right-handed 310
Helix 13
13
A
195 198Right-handed 310
Helix 14
14
A
199 209Right-handed alpha
Helix 15
15
A
215 232Right-handed alpha
Helix 16
16
A
248 259Right-handed alpha
Helix 17
17
A
273 277Right-handed 310
Helix 18
18
A
278 290Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2V9Z. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
21 24anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
61 62anti-parallel
Strand 3
A
35 38parallel
Strand 4
A
100 104parallel
Strand 5
A
123 129parallel
Strand 6
A
236 243parallel
Strand 7
A
262 270parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il