Analysis of interatomic Contacts of Structural Units in PDB entry:
2VA0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VA0 entry

There are 6 chains in PDB entry 2VA0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 49ALA 147
B
 ASP 47HIS 168
C
 ASP 48SER 146
D
 SER 49SER 146
E
 SER 49HIS 168
F
 SER 49ALA 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2VA0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 63Right-handed alpha
Helix 2
2
A
66 76Right-handed alpha
Helix 3
3
A
78 83Right-handed alpha
Helix 4
4
A
103 108Right-handed alpha
Helix 5
5
A
109 111Right-handed 310
Helix 6
6
B
49 63Right-handed alpha
Helix 7
7
B
66 77Right-handed alpha
Helix 8
8
B
78 83Right-handed alpha
Helix 9
9
B
103 108Right-handed alpha
Helix 10
10
B
109 111Right-handed 310
Helix 11
11
B
152 166Right-handed alpha
Helix 12
12
C
49 63Right-handed alpha
Helix 13
13
C
66 76Right-handed alpha
Helix 14
14
C
78 83Right-handed alpha
Helix 15
15
C
103 108Right-handed alpha
Helix 16
16
C
109 111Right-handed 310
Helix 17
17
D
49 63Right-handed alpha
Helix 18
18
D
66 76Right-handed alpha
Helix 19
19
D
78 83Right-handed alpha
Helix 20
20
D
103 108Right-handed alpha
Helix 21
21
D
109 111Right-handed 310
Helix 22
22
E
49 63Right-handed alpha
Helix 23
23
E
66 76Right-handed alpha
Helix 24
24
E
78 83Right-handed alpha
Helix 25
25
E
103 108Right-handed alpha
Helix 26
26
E
109 111Right-handed 310
Helix 27
27
E
148 152Right-handed 310
Helix 28
28
E
154 168Right-handed alpha
Helix 29
29
F
49 63Right-handed alpha
Helix 30
30
F
66 76Right-handed alpha
Helix 31
31
F
78 83Right-handed alpha
Helix 32
32
F
103 108Right-handed alpha
Helix 33
33
F
109 111Right-handed 310
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There are 6 sheets in PDB entry 2VA0. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
139 145anti-parallel
Strand 3
A
126 133anti-parallel
Strand 4
A
117 121anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 88first strand
Strand 2
B
139 145anti-parallel
Strand 3
B
125 133anti-parallel
Strand 4
B
117 122anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 88first strand
Strand 2
C
139 145anti-parallel
Strand 3
C
125 133anti-parallel
Strand 4
C
117 122anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 88first strand
Strand 2
D
139 145anti-parallel
Strand 3
D
125 133anti-parallel
Strand 4
D
117 122anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
85 89first strand
Strand 2
E
139 145anti-parallel
Strand 3
E
125 133anti-parallel
Strand 4
E
117 122anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
85 89first strand
Strand 2
F
139 145anti-parallel
Strand 3
F
125 133anti-parallel
Strand 4
F
117 122anti-parallel
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