Analysis of interatomic Contacts of Structural Units in PDB entry:
2VA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VA8 entry

There are 2 chains in PDB entry 2VA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -1ASN 705
B
 LEU -2ASN 705
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 2VA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 6Right-handed 310
Helix 2
2
A
9 18Right-handed alpha
Helix 3
3
A
25 34Right-handed alpha
Helix 4
4
A
51 67Right-handed alpha
Helix 5
5
A
77 89Right-handed alpha
Helix 6
6
A
90 95Right-handed 310
Helix 7
7
A
109 115Right-handed 310
Helix 8
8
A
121 132Right-handed alpha
Helix 9
9
A
133 137Right-handed 310
Helix 10
10
A
146 152Right-handed 310
Helix 11
11
A
155 168Right-handed alpha
Helix 12
12
A
180 189Right-handed alpha
Helix 13
13
A
232 243Right-handed alpha
Helix 14
14
A
254 268Right-handed alpha
Helix 15
15
A
275 288Right-handed alpha
Helix 16
16
A
293 305Right-handed alpha
Helix 17
17
A
316 329Right-handed alpha
Helix 18
18
A
339 344Right-handed 310
Helix 19
19
A
372 381Right-handed alpha
Helix 20
20
A
400 402Right-handed 310
Helix 21
21
A
403 411Right-handed alpha
Helix 22
22
A
425 441Right-handed alpha
Helix 23
23
A
445 453Right-handed alpha
Helix 24
24
A
458 476Right-handed alpha
Helix 25
25
A
489 499Right-handed alpha
Helix 26
26
A
501 515Right-handed alpha
Helix 27
27
A
519 530Right-handed alpha
Helix 28
28
A
539 551Right-handed alpha
Helix 29
29
A
564 586Right-handed alpha
Helix 30
30
A
589 598Right-handed alpha
Helix 31
31
A
600 625Right-handed alpha
Helix 32
32
A
627 644Right-handed alpha
Helix 33
33
A
646 648Right-handed 310
Helix 34
34
A
649 654Right-handed alpha
Helix 35
35
A
659 669Right-handed alpha
Helix 36
36
A
673 680Right-handed alpha
Helix 37
37
A
680 689Right-handed alpha
Helix 38
38
A
689 705Right-handed alpha
Helix 39
39
B
3 6Right-handed 310
Helix 40
40
B
9 19Right-handed alpha
Helix 41
41
B
25 34Right-handed alpha
Helix 42
42
B
35 39Right-handed 310
Helix 43
43
B
51 67Right-handed alpha
Helix 44
44
B
77 89Right-handed alpha
Helix 45
45
B
90 95Right-handed 310
Helix 46
46
B
109 115Right-handed 310
Helix 47
47
B
122 132Right-handed alpha
Helix 48
48
B
133 137Right-handed 310
Helix 49
49
B
147 152Right-handed 310
Helix 50
50
B
155 167Right-handed alpha
Helix 51
51
B
180 189Right-handed alpha
Helix 52
52
B
232 243Right-handed alpha
Helix 53
53
B
254 267Right-handed alpha
Helix 54
54
B
275 289Right-handed alpha
Helix 55
55
B
293 305Right-handed alpha
Helix 56
56
B
316 329Right-handed alpha
Helix 57
57
B
339 344Right-handed alpha
Helix 58
58
B
372 381Right-handed alpha
Helix 59
59
B
400 402Right-handed 310
Helix 60
60
B
403 412Right-handed alpha
Helix 61
61
B
425 441Right-handed alpha
Helix 62
62
B
444 453Right-handed alpha
Helix 63
63
B
458 476Right-handed alpha
Helix 64
64
B
489 499Right-handed alpha
Helix 65
65
B
501 515Right-handed alpha
Helix 66
66
B
519 530Right-handed alpha
Helix 67
67
B
539 552Right-handed alpha
Helix 68
68
B
564 586Right-handed alpha
Helix 69
69
B
589 598Right-handed alpha
Helix 70
70
B
600 625Right-handed alpha
Helix 71
71
B
627 644Right-handed alpha
Helix 72
72
B
646 650Right-handed 310
Helix 73
73
B
651 655Right-handed 310
Helix 74
74
B
659 669Right-handed alpha
Helix 75
75
B
673 680Right-handed alpha
Helix 76
76
B
680 689Right-handed alpha
Helix 77
77
B
689 705Right-handed alpha
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There are 6 sheets in PDB entry 2VA8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
117 120parallel
Strand 3
A
70 74parallel
Strand 4
A
139 144parallel
Strand 5
A
170 175parallel
Strand 6
A
42 45parallel
Strand 7
A
191 194parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 229first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
202 209anti-parallel
Strand 4
A
392 397parallel
Strand 5
A
351 354parallel
Strand 6
A
248 251parallel
Strand 7
A
334 337parallel
Strand 8
A
308 311parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
485 488anti-parallel
Strand 3
A
479 481anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
117 121parallel
Strand 3
B
70 75parallel
Strand 4
B
139 145parallel
Strand 5
B
170 175parallel
Strand 6
B
42 45parallel
Strand 7
B
191 194parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 229first strand
Strand 2
B
215 220anti-parallel
Strand 3
B
202 209anti-parallel
Strand 4
B
392 397parallel
Strand 5
B
351 354parallel
Strand 6
B
248 251parallel
Strand 7
B
334 337parallel
Strand 8
B
308 311parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 481first strand
Strand 2
B
486 488anti-parallel
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