Analysis of interatomic Contacts of Structural Units in PDB entry:
2VAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VAD entry

There are 2 chains in PDB entry 2VAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4PHE 65
A
 SER 69GLY 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2VAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 61Right-handed 310
Helix 2
2
A
61 65Right-handed 310
Helix 3
3
A
69 73Right-handed 310
Helix 4
4
A
81 86Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2VAD.

There are 30 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 50anti-parallel
Strand 4
A
210 220anti-parallel
Strand 5
A
193 204anti-parallel
Strand 6
A
146 153anti-parallel
Strand 7
A
156 167parallel
Strand 8
A
140 143anti-parallel
Strand 9
A
25 36first strand
Strand 10
A
12 22anti-parallel
Strand 11
A
41 50first strand
Strand 12
A
25 36anti-parallel
Strand 13
A
91 99first strand
Strand 14
A
104 114anti-parallel
Strand 15
A
104 114first strand
Strand 16
A
91 99anti-parallel
Strand 17
A
117 127first strand
Strand 18
A
12 22parallel
Strand 19
A
140 143first strand
Strand 20
A
156 167anti-parallel
Strand 21
A
146 153anti-parallel
Strand 22
A
193 204anti-parallel
Strand 23
A
156 167first strand
Strand 24
A
140 143anti-parallel
Strand 25
A
172 183first strand
Strand 26
A
91 99anti-parallel
Strand 27
A
193 204first strand
Strand 28
A
146 153anti-parallel
Strand 29
A
210 220first strand
Strand 30
A
41 50anti-parallel
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