Analysis of interatomic Contacts of Structural Units in PDB entry:
2VAE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VAE entry

There are 16 chains in PDB entry 2VAE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 7	PHE 65
A	SER 69	LEU 225
B	VAL 7	PHE 65
B	SER 69	LEU 225
C	VAL 7	PHE 65
C	SER 69	LEU 225
D	VAL 7	PHE 65
D	SER 69	LEU 225
E	VAL 7	PHE 65
E	SER 69	LEU 225
F	VAL 7	PHE 65
F	SER 69	LEU 225
G	VAL 7	PHE 65
G	SER 69	LEU 225
H	VAL 7	PHE 65
H	SER 69	LEU 225

There are 32 helices in PDB entry 2VAE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	57	61	Right-handed 310
Helix 2	2	A	61	65	Right-handed 310
Helix 3	3	A	69	73	Right-handed 310
Helix 4	4	A	81	86	Right-handed alpha
Helix 5	5	B	57	61	Right-handed 310
Helix 6	6	B	61	65	Right-handed 310
Helix 7	7	B	69	73	Right-handed 310
Helix 8	8	B	81	86	Right-handed alpha
Helix 9	9	C	57	61	Right-handed 310
Helix 10	10	C	61	65	Right-handed 310
Helix 11	11	C	69	73	Right-handed 310
Helix 12	12	C	81	86	Right-handed alpha
Helix 13	13	D	57	61	Right-handed 310
Helix 14	14	D	61	65	Right-handed 310
Helix 15	15	D	69	73	Right-handed 310
Helix 16	16	D	81	86	Right-handed alpha
Helix 17	17	E	57	61	Right-handed 310
Helix 18	18	E	61	65	Right-handed 310
Helix 19	19	E	69	73	Right-handed 310
Helix 20	20	E	81	86	Right-handed alpha
Helix 21	21	F	57	61	Right-handed 310
Helix 22	22	F	61	65	Right-handed 310
Helix 23	23	F	69	73	Right-handed 310
Helix 24	24	F	81	86	Right-handed alpha
Helix 25	25	G	57	61	Right-handed 310
Helix 26	26	G	61	65	Right-handed 310
Helix 27	27	G	69	73	Right-handed 310
Helix 28	28	G	81	86	Right-handed alpha
Helix 29	29	H	57	61	Right-handed 310
Helix 30	30	H	61	65	Right-handed 310
Helix 31	31	H	69	73	Right-handed 310
Helix 32	32	H	81	86	Right-handed alpha

There are 8 sheets in PDB entry 2VAE. Click on sheet of interest to get list of strands forming it: AA, BA, CA, DA, EA, FA, GA, HA,

There are 30 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	22	first strand
Strand 2	A	25	35	anti-parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	210	220	anti-parallel
Strand 5	A	193	204	anti-parallel
Strand 6	A	146	153	anti-parallel
Strand 7	A	156	167	parallel
Strand 8	A	140	143	anti-parallel
Strand 9	A	25	35	first strand
Strand 10	A	12	22	anti-parallel
Strand 11	A	41	50	first strand
Strand 12	A	25	35	anti-parallel
Strand 13	A	91	99	first strand
Strand 14	A	104	114	anti-parallel
Strand 15	A	104	114	first strand
Strand 16	A	91	99	anti-parallel
Strand 17	A	117	127	first strand
Strand 18	A	12	22	parallel
Strand 19	A	140	143	first strand
Strand 20	A	156	167	anti-parallel
Strand 21	A	146	153	anti-parallel
Strand 22	A	193	204	anti-parallel
Strand 23	A	156	167	first strand
Strand 24	A	140	143	anti-parallel
Strand 25	A	172	183	first strand
Strand 26	A	91	99	anti-parallel
Strand 27	A	193	204	first strand
Strand 28	A	146	153	anti-parallel
Strand 29	A	210	220	first strand
Strand 30	A	41	50	anti-parallel

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There are 24 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	22	first strand
Strand 2	B	25	35	anti-parallel
Strand 3	B	25	35	first strand
Strand 4	B	12	22	anti-parallel
Strand 5	B	41	50	first strand
Strand 6	B	25	35	anti-parallel
Strand 7	B	91	99	first strand
Strand 8	B	104	114	anti-parallel
Strand 9	B	104	114	first strand
Strand 10	B	91	99	anti-parallel
Strand 11	B	117	127	first strand
Strand 12	B	12	22	parallel
Strand 13	B	140	143	first strand
Strand 14	B	156	167	anti-parallel
Strand 15	B	146	153	anti-parallel
Strand 16	B	193	204	anti-parallel
Strand 17	B	156	167	first strand
Strand 18	B	140	143	anti-parallel
Strand 19	B	172	183	first strand
Strand 20	B	91	99	anti-parallel
Strand 21	B	193	204	first strand
Strand 22	B	146	153	anti-parallel
Strand 23	B	210	220	first strand
Strand 24	B	41	50	anti-parallel

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There are 24 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	22	first strand
Strand 2	C	25	35	anti-parallel
Strand 3	C	25	35	first strand
Strand 4	C	12	22	anti-parallel
Strand 5	C	41	50	first strand
Strand 6	C	25	35	anti-parallel
Strand 7	C	91	99	first strand
Strand 8	C	104	114	anti-parallel
Strand 9	C	104	114	first strand
Strand 10	C	91	99	anti-parallel
Strand 11	C	117	127	first strand
Strand 12	C	12	22	parallel
Strand 13	C	140	143	first strand
Strand 14	C	156	167	anti-parallel
Strand 15	C	146	153	anti-parallel
Strand 16	C	193	204	anti-parallel
Strand 17	C	156	167	first strand
Strand 18	C	140	143	anti-parallel
Strand 19	C	172	183	first strand
Strand 20	C	91	99	anti-parallel
Strand 21	C	193	204	first strand
Strand 22	C	146	153	anti-parallel
Strand 23	C	210	220	first strand
Strand 24	C	41	50	anti-parallel

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There are 24 strands in DA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	22	first strand
Strand 2	D	25	36	anti-parallel
Strand 3	D	25	36	first strand
Strand 4	D	12	22	anti-parallel
Strand 5	D	41	50	first strand
Strand 6	D	25	36	anti-parallel
Strand 7	D	91	99	first strand
Strand 8	D	104	114	anti-parallel
Strand 9	D	104	114	first strand
Strand 10	D	91	99	anti-parallel
Strand 11	D	117	127	first strand
Strand 12	D	12	22	parallel
Strand 13	D	140	143	first strand
Strand 14	D	156	167	anti-parallel
Strand 15	D	146	153	anti-parallel
Strand 16	D	193	204	anti-parallel
Strand 17	D	156	167	first strand
Strand 18	D	140	143	anti-parallel
Strand 19	D	172	183	first strand
Strand 20	D	91	99	anti-parallel
Strand 21	D	193	204	first strand
Strand 22	D	146	153	anti-parallel
Strand 23	D	210	220	first strand
Strand 24	D	41	50	anti-parallel

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There are 24 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	22	first strand
Strand 2	E	25	35	anti-parallel
Strand 3	E	25	35	first strand
Strand 4	E	12	22	anti-parallel
Strand 5	E	41	50	first strand
Strand 6	E	25	35	anti-parallel
Strand 7	E	91	99	first strand
Strand 8	E	104	114	anti-parallel
Strand 9	E	104	114	first strand
Strand 10	E	91	99	anti-parallel
Strand 11	E	117	127	first strand
Strand 12	E	12	22	parallel
Strand 13	E	140	143	first strand
Strand 14	E	156	167	anti-parallel
Strand 15	E	146	153	anti-parallel
Strand 16	E	193	204	anti-parallel
Strand 17	E	156	167	first strand
Strand 18	E	140	143	anti-parallel
Strand 19	E	172	183	first strand
Strand 20	E	91	99	anti-parallel
Strand 21	E	193	204	first strand
Strand 22	E	146	153	anti-parallel
Strand 23	E	210	220	first strand
Strand 24	E	41	50	anti-parallel

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There are 24 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	22	first strand
Strand 2	F	25	36	anti-parallel
Strand 3	F	25	36	first strand
Strand 4	F	12	22	anti-parallel
Strand 5	F	41	50	first strand
Strand 6	F	25	36	anti-parallel
Strand 7	F	91	99	first strand
Strand 8	F	104	114	anti-parallel
Strand 9	F	104	114	first strand
Strand 10	F	91	99	anti-parallel
Strand 11	F	117	127	first strand
Strand 12	F	12	22	parallel
Strand 13	F	140	143	first strand
Strand 14	F	156	167	anti-parallel
Strand 15	F	146	153	anti-parallel
Strand 16	F	193	204	anti-parallel
Strand 17	F	156	167	first strand
Strand 18	F	140	143	anti-parallel
Strand 19	F	172	183	first strand
Strand 20	F	91	99	anti-parallel
Strand 21	F	193	204	first strand
Strand 22	F	146	153	anti-parallel
Strand 23	F	210	220	first strand
Strand 24	F	41	50	anti-parallel

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There are 24 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	22	first strand
Strand 2	G	25	35	anti-parallel
Strand 3	G	25	35	first strand
Strand 4	G	12	22	anti-parallel
Strand 5	G	41	50	first strand
Strand 6	G	25	35	anti-parallel
Strand 7	G	91	99	first strand
Strand 8	G	104	114	anti-parallel
Strand 9	G	104	114	first strand
Strand 10	G	91	99	anti-parallel
Strand 11	G	117	127	first strand
Strand 12	G	12	22	parallel
Strand 13	G	140	143	first strand
Strand 14	G	156	167	anti-parallel
Strand 15	G	146	153	anti-parallel
Strand 16	G	193	204	anti-parallel
Strand 17	G	156	167	first strand
Strand 18	G	140	143	anti-parallel
Strand 19	G	172	183	first strand
Strand 20	G	91	99	anti-parallel
Strand 21	G	193	204	first strand
Strand 22	G	146	153	anti-parallel
Strand 23	G	210	220	first strand
Strand 24	G	41	50	anti-parallel

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There are 24 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	22	first strand
Strand 2	H	25	35	anti-parallel
Strand 3	H	25	35	first strand
Strand 4	H	12	22	anti-parallel
Strand 5	H	41	50	first strand
Strand 6	H	25	35	anti-parallel
Strand 7	H	91	99	first strand
Strand 8	H	104	114	anti-parallel
Strand 9	H	104	114	first strand
Strand 10	H	91	99	anti-parallel
Strand 11	H	117	127	first strand
Strand 12	H	12	22	parallel
Strand 13	H	140	143	first strand
Strand 14	H	156	167	anti-parallel
Strand 15	H	146	153	anti-parallel
Strand 16	H	193	204	anti-parallel
Strand 17	H	156	167	first strand
Strand 18	H	140	143	anti-parallel
Strand 19	H	172	183	first strand
Strand 20	H	91	99	anti-parallel
Strand 21	H	193	204	first strand
Strand 22	H	146	153	anti-parallel
Strand 23	H	210	220	first strand
Strand 24	H	41	50	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VAE

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VAE