Analysis of interatomic Contacts of Structural Units in PDB entry:
2VAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VAF entry

There is 1 chain in PDB entry 2VAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1003ILE 1351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2VAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1019 1030Right-handed alpha
Helix 2
2
A
1046 1066Right-handed alpha
Helix 3
3
A
1078 1085Right-handed alpha
Helix 4
4
A
1111 1123Right-handed alpha
Helix 5
5
A
1132 1140Right-handed alpha
Helix 6
6
A
1157 1170Right-handed alpha
Helix 7
7
A
1181 1189Right-handed alpha
Helix 8
8
A
1214 1226Right-handed alpha
Helix 9
9
A
1236 1244Right-handed alpha
Helix 10
10
A
1259 1276Right-handed alpha
Helix 11
11
A
1292 1303Right-handed alpha
Helix 12
12
A
1335 1344Right-handed alpha
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There are 3 sheets in PDB entry 2VAF. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1016 1018first strand
Strand 2
A
1070 1075parallel
Strand 3
A
1032 1037parallel
Strand 4
A
1095 1098anti-parallel
Strand 5
A
1103 1104anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1130first strand
Strand 2
A
1177 1179parallel
Strand 3
A
1147 1151parallel
Strand 4
A
1195 1198anti-parallel
Strand 5
A
1205 1208anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1230 1232first strand
Strand 2
A
1284 1287parallel
Strand 3
A
1249 1254parallel
Strand 4
A
1311 1316anti-parallel
Strand 5
A
1322 1323anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il