Analysis of interatomic Contacts of Structural Units in PDB entry:
2VAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VAM entry

There is 1 chain in PDB entry 2VAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12PHE 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2VAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
46 51Right-handed alpha
Helix 3
3
A
62 67Right-handed alpha
Helix 4
4
A
74 85Right-handed alpha
Helix 5
5
A
85 94Right-handed alpha
Helix 6
6
A
108 124Right-handed alpha
Helix 7
7
A
136 139Right-handed 310
Helix 8
8
A
140 156Right-handed alpha
Helix 9
9
A
166 170Right-handed alpha
Helix 10
10
A
178 202Right-handed alpha
Helix 11
11
A
210 218Right-handed alpha
Helix 12
12
A
235 246Right-handed alpha
Helix 13
13
A
253 257Right-handed 310
Helix 14
14
A
271 286Right-handed alpha
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There are 2 sheets in PDB entry 2VAM. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
39 44parallel
Strand 3
A
14 19parallel
Strand 4
A
98 104parallel
Strand 5
A
127 134parallel
Strand 6
A
160 165parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 232first strand
Strand 2
A
305 315anti-parallel
Strand 3
A
260 266anti-parallel
Strand 4
A
292 298parallel
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