Analysis of interatomic Contacts of Structural Units in PDB entry:
2VAO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VAO entry

There are 2 chains in PDB entry 2VAO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6LEU 560
B
 GLU 6LEU 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 2VAO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 32Right-handed alpha
Helix 2
2
A
34 36Right-handed 310
Helix 3
3
A
43 45Right-handed 310
Helix 4
4
A
51 53Right-handed 310
Helix 5
5
A
80 93Right-handed alpha
Helix 6
6
A
123 126Right-handed alpha
Helix 7
7
A
148 156Right-handed alpha
Helix 8
8
A
160 162Right-handed 310
Helix 9
9
A
176 182Right-handed alpha
Helix 10
10
A
189 191Right-handed 310
Helix 11
11
A
194 196Right-handed 310
Helix 12
12
A
213 216Right-handed 310
Helix 13
13
A
223 225Right-handed 310
Helix 14
14
A
230 232Right-handed 310
Helix 15
15
A
251 254Right-handed 310
Helix 16
16
A
286 302Right-handed 310
Helix 17
17
A
314 321Right-handed alpha
Helix 18
18
A
336 346Right-handed alpha
Helix 19
19
A
361 377Right-handed alpha
Helix 20
20
A
386 388Right-handed 310
Helix 21
21
A
394 403Right-handed alpha
Helix 22
22
A
410 415Right-handed 310
Helix 23
23
A
433 449Right-handed alpha
Helix 24
24
A
478 498Right-handed alpha
Helix 25
25
A
507 516Right-handed 310
Helix 26
26
A
519 535Right-handed alpha
Helix 27
27
A
545 547Right-handed 310
Helix 28
28
A
555 558Right-handed alpha
Helix 29
29
B
18 32Right-handed alpha
Helix 30
30
B
34 36Right-handed 310
Helix 31
31
B
43 45Right-handed 310
Helix 32
32
B
51 53Right-handed 310
Helix 33
33
B
80 93Right-handed alpha
Helix 34
34
B
123 126Right-handed alpha
Helix 35
35
B
148 156Right-handed alpha
Helix 36
36
B
160 162Right-handed 310
Helix 37
37
B
176 182Right-handed alpha
Helix 38
38
B
189 191Right-handed 310
Helix 39
39
B
194 196Right-handed 310
Helix 40
40
B
213 216Right-handed 310
Helix 41
41
B
223 225Right-handed 310
Helix 42
42
B
230 232Right-handed 310
Helix 43
43
B
251 254Right-handed 310
Helix 44
44
B
286 302Right-handed 310
Helix 45
45
B
314 321Right-handed alpha
Helix 46
46
B
336 346Right-handed alpha
Helix 47
47
B
361 377Right-handed alpha
Helix 48
48
B
386 388Right-handed 310
Helix 49
49
B
394 403Right-handed alpha
Helix 50
50
B
410 415Right-handed 310
Helix 51
51
B
433 449Right-handed alpha
Helix 52
52
B
478 498Right-handed alpha
Helix 53
53
B
507 516Right-handed 310
Helix 54
54
B
519 535Right-handed alpha
Helix 55
55
B
545 547Right-handed 310
Helix 56
56
B
555 558Right-handed alpha
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There are 8 sheets in PDB entry 2VAO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
73 75anti-parallel
Strand 3
A
119 122parallel
Strand 4
A
97 100parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
139 142anti-parallel
Strand 3
A
260 268anti-parallel
Strand 4
A
200 204anti-parallel
Strand 5
A
209 211anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
276 283anti-parallel
Strand 3
A
351 358anti-parallel
Strand 4
A
310 313anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 429first strand
Strand 2
A
465 474anti-parallel
Strand 3
A
456 460anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
73 75anti-parallel
Strand 3
B
119 122parallel
Strand 4
B
97 100parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 134first strand
Strand 2
B
139 142anti-parallel
Strand 3
B
260 268anti-parallel
Strand 4
B
200 204anti-parallel
Strand 5
B
209 211anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 384first strand
Strand 2
B
276 283anti-parallel
Strand 3
B
351 358anti-parallel
Strand 4
B
310 313anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 429first strand
Strand 2
B
465 474anti-parallel
Strand 3
B
456 460anti-parallel
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