Analysis of interatomic Contacts of Structural Units in PDB entry:
2VAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VAV entry

There are 24 chains in PDB entry 2VAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 7	ALA 148
A	MET 150	GLN 382
B	ALA 6	ALA 148
B	MET 150	SER 383
C	ILE 5	ALA 148
C	MET 150	GLN 382
D	ILE 5	ALA 148
D	MET 150	GLN 382
E	ASN 7	ALA 148
E	MET 150	GLN 382
F	ASN 7	ALA 148
F	MET 150	GLN 382
G	ASN 7	ALA 148
G	MET 150	GLN 382
H	ASN 7	ALA 148
H	MET 150	GLN 382
I	ASN 7	ALA 148
I	MET 150	SER 383
J	ASN 7	ALA 148
J	MET 150	LEU 384
K	ASN 7	ALA 148
K	MET 150	LEU 384
L	ASN 7	ALA 148
L	MET 150	GLN 382

There are210 helices in PDB entry 2VAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	12	Right-handed alpha
Helix 2	2	A	64	68	Right-handed 310
Helix 3	3	A	69	72	Right-handed 310
Helix 4	4	A	105	109	Right-handed 310
Helix 5	5	A	114	118	Right-handed 310
Helix 6	6	A	122	138	Right-handed alpha
Helix 7	7	A	150	159	Right-handed alpha
Helix 8	8	A	160	162	Right-handed 310
Helix 9	9	A	179	195	Right-handed alpha
Helix 10	10	A	199	203	Right-handed 310
Helix 11	11	A	210	225	Right-handed alpha
Helix 12	12	A	227	235	Right-handed alpha
Helix 13	13	A	273	288	Right-handed alpha
Helix 14	14	A	290	302	Right-handed alpha
Helix 15	15	A	313	319	Right-handed alpha
Helix 16	16	A	337	348	Right-handed alpha
Helix 17	17	A	363	368	Right-handed alpha
Helix 18	18	A	368	382	Right-handed alpha
Helix 19	19	B	7	12	Right-handed alpha
Helix 20	20	B	64	68	Right-handed 310
Helix 21	21	B	69	72	Right-handed 310
Helix 22	22	B	114	118	Right-handed 310
Helix 23	23	B	122	138	Right-handed alpha
Helix 24	24	B	150	159	Right-handed alpha
Helix 25	25	B	160	162	Right-handed 310
Helix 26	26	B	179	195	Right-handed alpha
Helix 27	27	B	199	203	Right-handed 310
Helix 28	28	B	210	225	Right-handed alpha
Helix 29	29	B	227	235	Right-handed alpha
Helix 30	30	B	273	288	Right-handed alpha
Helix 31	31	B	290	301	Right-handed alpha
Helix 32	32	B	302	304	Right-handed 310
Helix 33	33	B	313	319	Right-handed alpha
Helix 34	34	B	337	348	Right-handed alpha
Helix 35	35	B	363	368	Right-handed alpha
Helix 36	36	B	368	382	Right-handed alpha
Helix 37	37	C	7	12	Right-handed alpha
Helix 38	38	C	64	68	Right-handed 310
Helix 39	39	C	69	72	Right-handed 310
Helix 40	40	C	105	109	Right-handed 310
Helix 41	41	C	114	118	Right-handed 310
Helix 42	42	C	122	138	Right-handed alpha
Helix 43	43	C	150	159	Right-handed alpha
Helix 44	44	C	160	162	Right-handed 310
Helix 45	45	C	179	195	Right-handed alpha
Helix 46	46	C	199	203	Right-handed 310
Helix 47	47	C	210	225	Right-handed alpha
Helix 48	48	C	227	235	Right-handed alpha
Helix 49	49	C	273	288	Right-handed alpha
Helix 50	50	C	290	303	Right-handed alpha
Helix 51	51	C	313	319	Right-handed alpha
Helix 52	52	C	337	348	Right-handed alpha
Helix 53	53	C	363	368	Right-handed alpha
Helix 54	54	C	368	382	Right-handed alpha
Helix 55	55	D	7	12	Right-handed alpha
Helix 56	56	D	64	68	Right-handed 310
Helix 57	57	D	69	72	Right-handed 310
Helix 58	58	D	114	118	Right-handed 310
Helix 59	59	D	122	138	Right-handed alpha
Helix 60	60	D	150	159	Right-handed alpha
Helix 61	61	D	160	162	Right-handed 310
Helix 62	62	D	179	195	Right-handed alpha
Helix 63	63	D	199	203	Right-handed 310
Helix 64	64	D	210	225	Right-handed alpha
Helix 65	65	D	227	235	Right-handed alpha
Helix 66	66	D	273	288	Right-handed alpha
Helix 67	67	D	290	303	Right-handed alpha
Helix 68	68	D	313	319	Right-handed alpha
Helix 69	69	D	337	348	Right-handed alpha
Helix 70	70	D	363	368	Right-handed alpha
Helix 71	71	D	368	382	Right-handed alpha
Helix 72	72	E	7	12	Right-handed alpha
Helix 73	73	E	64	68	Right-handed 310
Helix 74	74	E	69	72	Right-handed 310
Helix 75	75	E	114	118	Right-handed 310
Helix 76	76	E	122	138	Right-handed alpha
Helix 77	77	E	150	159	Right-handed alpha
Helix 78	78	E	160	162	Right-handed 310
Helix 79	79	E	179	195	Right-handed alpha
Helix 80	80	E	199	203	Right-handed 310
Helix 81	81	E	210	225	Right-handed alpha
Helix 82	82	E	227	235	Right-handed alpha
Helix 83	83	E	273	288	Right-handed alpha
Helix 84	84	E	290	302	Right-handed alpha
Helix 85	85	E	313	319	Right-handed alpha
Helix 86	86	E	337	348	Right-handed alpha
Helix 87	87	E	363	368	Right-handed alpha
Helix 88	88	E	368	382	Right-handed alpha
Helix 89	89	F	7	12	Right-handed alpha
Helix 90	90	F	64	68	Right-handed 310
Helix 91	91	F	69	72	Right-handed 310
Helix 92	92	F	114	118	Right-handed 310
Helix 93	93	F	122	138	Right-handed alpha
Helix 94	94	F	150	160	Right-handed alpha
Helix 95	95	F	179	195	Right-handed alpha
Helix 96	96	F	199	203	Right-handed 310
Helix 97	97	F	210	225	Right-handed alpha
Helix 98	98	F	227	235	Right-handed alpha
Helix 99	99	F	273	288	Right-handed alpha
Helix 100	100	F	290	303	Right-handed alpha
Helix 101	101	F	313	320	Right-handed alpha
Helix 102	102	F	337	348	Right-handed alpha
Helix 103	103	F	363	368	Right-handed alpha
Helix 104	104	F	368	382	Right-handed alpha
Helix 105	105	G	7	12	Right-handed alpha
Helix 106	106	G	64	68	Right-handed 310
Helix 107	107	G	69	72	Right-handed 310
Helix 108	108	G	114	118	Right-handed 310
Helix 109	109	G	122	138	Right-handed alpha
Helix 110	110	G	150	159	Right-handed alpha
Helix 111	111	G	160	162	Right-handed 310
Helix 112	112	G	179	195	Right-handed alpha
Helix 113	113	G	199	203	Right-handed 310
Helix 114	114	G	210	225	Right-handed alpha
Helix 115	115	G	227	235	Right-handed alpha
Helix 116	116	G	273	288	Right-handed alpha
Helix 117	117	G	290	301	Right-handed alpha
Helix 118	118	G	302	304	Right-handed 310
Helix 119	119	G	313	319	Right-handed alpha
Helix 120	120	G	337	348	Right-handed alpha
Helix 121	121	G	363	368	Right-handed alpha
Helix 122	122	G	368	382	Right-handed alpha
Helix 123	123	H	7	12	Right-handed alpha
Helix 124	124	H	64	68	Right-handed 310
Helix 125	125	H	69	72	Right-handed 310
Helix 126	126	H	114	118	Right-handed 310
Helix 127	127	H	122	138	Right-handed alpha
Helix 128	128	H	150	159	Right-handed alpha
Helix 129	129	H	160	162	Right-handed 310
Helix 130	130	H	179	195	Right-handed alpha
Helix 131	131	H	199	203	Right-handed 310
Helix 132	132	H	210	225	Right-handed alpha
Helix 133	133	H	227	235	Right-handed alpha
Helix 134	134	H	273	288	Right-handed alpha
Helix 135	135	H	290	301	Right-handed alpha
Helix 136	136	H	302	304	Right-handed 310
Helix 137	137	H	313	319	Right-handed alpha
Helix 138	138	H	337	348	Right-handed alpha
Helix 139	139	H	363	368	Right-handed alpha
Helix 140	140	H	368	382	Right-handed alpha
Helix 141	141	I	7	12	Right-handed alpha
Helix 142	142	I	64	68	Right-handed 310
Helix 143	143	I	69	72	Right-handed 310
Helix 144	144	I	114	118	Right-handed 310
Helix 145	145	I	122	138	Right-handed alpha
Helix 146	146	I	150	159	Right-handed alpha
Helix 147	147	I	160	162	Right-handed 310
Helix 148	148	I	179	195	Right-handed alpha
Helix 149	149	I	199	203	Right-handed 310
Helix 150	150	I	210	225	Right-handed alpha
Helix 151	151	I	227	235	Right-handed alpha
Helix 152	152	I	273	288	Right-handed alpha
Helix 153	153	I	290	301	Right-handed alpha
Helix 154	154	I	302	304	Right-handed 310
Helix 155	155	I	313	319	Right-handed alpha
Helix 156	156	I	337	348	Right-handed alpha
Helix 157	157	I	363	368	Right-handed alpha
Helix 158	158	I	368	382	Right-handed alpha
Helix 159	159	J	7	12	Right-handed alpha
Helix 160	160	J	64	68	Right-handed 310
Helix 161	161	J	69	72	Right-handed 310
Helix 162	162	J	114	118	Right-handed 310
Helix 163	163	J	122	137	Right-handed alpha
Helix 164	164	J	150	159	Right-handed alpha
Helix 165	165	J	160	162	Right-handed 310
Helix 166	166	J	179	195	Right-handed alpha
Helix 167	167	J	199	203	Right-handed 310
Helix 168	168	J	210	225	Right-handed alpha
Helix 169	169	J	227	234	Right-handed alpha
Helix 170	170	J	273	288	Right-handed alpha
Helix 171	171	J	290	302	Right-handed alpha
Helix 172	172	J	313	319	Right-handed alpha
Helix 173	173	J	337	348	Right-handed alpha
Helix 174	174	J	363	368	Right-handed alpha
Helix 175	175	J	368	382	Right-handed alpha
Helix 176	176	K	7	12	Right-handed alpha
Helix 177	177	K	64	68	Right-handed 310
Helix 178	178	K	69	72	Right-handed 310
Helix 179	179	K	114	118	Right-handed 310
Helix 180	180	K	122	138	Right-handed alpha
Helix 181	181	K	150	159	Right-handed alpha
Helix 182	182	K	160	162	Right-handed 310
Helix 183	183	K	179	195	Right-handed alpha
Helix 184	184	K	199	203	Right-handed 310
Helix 185	185	K	210	225	Right-handed alpha
Helix 186	186	K	227	234	Right-handed alpha
Helix 187	187	K	273	288	Right-handed alpha
Helix 188	188	K	290	302	Right-handed alpha
Helix 189	189	K	313	319	Right-handed alpha
Helix 190	190	K	337	348	Right-handed alpha
Helix 191	191	K	363	368	Right-handed alpha
Helix 192	192	K	368	381	Right-handed alpha
Helix 193	193	L	7	12	Right-handed alpha
Helix 194	194	L	64	68	Right-handed 310
Helix 195	195	L	69	72	Right-handed 310
Helix 196	196	L	114	118	Right-handed 310
Helix 197	197	L	122	138	Right-handed alpha
Helix 198	198	L	150	159	Right-handed alpha
Helix 199	199	L	160	162	Right-handed 310
Helix 200	200	L	179	195	Right-handed alpha
Helix 201	201	L	199	203	Right-handed 310
Helix 202	202	L	210	225	Right-handed alpha
Helix 203	203	L	227	235	Right-handed alpha
Helix 204	204	L	273	288	Right-handed alpha
Helix 205	205	L	290	301	Right-handed alpha
Helix 206	206	L	302	304	Right-handed 310
Helix 207	207	L	313	319	Right-handed alpha
Helix 208	208	L	337	348	Right-handed alpha
Helix 209	209	L	363	368	Right-handed alpha
Helix 210	210	L	368	382	Right-handed alpha

There are 26 sheets in PDB entry 2VAV. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB, GA, GB, HA, HB, IA, IB, JA, JB, JC, KA, KB, KC, LA, LB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	25	first strand
Strand 2	A	31	42	anti-parallel
Strand 3	A	85	89	anti-parallel
Strand 4	A	52	56	parallel
Strand 5	A	142	147	parallel
Strand 6	A	169	171	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	351	355	parallel
Strand 3	K	382	383	parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	25	first strand
Strand 2	B	31	42	anti-parallel
Strand 3	B	85	89	anti-parallel
Strand 4	B	52	56	parallel
Strand 5	B	142	147	parallel
Strand 6	B	169	171	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	329	first strand
Strand 2	B	351	355	parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	25	first strand
Strand 2	C	31	42	anti-parallel
Strand 3	C	85	89	anti-parallel
Strand 4	C	52	56	parallel
Strand 5	C	142	147	parallel
Strand 6	C	169	171	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	329	first strand
Strand 2	C	351	355	parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	25	first strand
Strand 2	D	31	42	anti-parallel
Strand 3	D	85	89	anti-parallel
Strand 4	D	52	56	parallel
Strand 5	D	142	147	parallel
Strand 6	D	169	171	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	330	first strand
Strand 2	D	351	356	parallel

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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	25	first strand
Strand 2	E	31	42	anti-parallel
Strand 3	E	85	89	anti-parallel
Strand 4	E	52	56	parallel
Strand 5	E	142	147	parallel
Strand 6	E	169	171	parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	329	first strand
Strand 2	E	351	355	parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	25	first strand
Strand 2	F	31	42	anti-parallel
Strand 3	F	85	89	anti-parallel
Strand 4	F	52	56	parallel
Strand 5	F	142	147	parallel
Strand 6	F	169	171	parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	325	329	first strand
Strand 2	F	351	355	parallel

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There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	25	first strand
Strand 2	G	31	42	anti-parallel
Strand 3	G	85	89	anti-parallel
Strand 4	G	52	56	parallel
Strand 5	G	142	147	parallel
Strand 6	G	169	171	parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	325	329	first strand
Strand 2	G	351	355	parallel

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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	25	first strand
Strand 2	H	31	42	anti-parallel
Strand 3	H	85	89	anti-parallel
Strand 4	H	52	56	parallel
Strand 5	H	142	147	parallel
Strand 6	H	169	171	parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	325	329	first strand
Strand 2	H	351	355	parallel

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There are 6 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	25	first strand
Strand 2	I	31	42	anti-parallel
Strand 3	I	85	89	anti-parallel
Strand 4	I	52	56	parallel
Strand 5	I	142	147	parallel
Strand 6	I	169	171	parallel

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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	325	329	first strand
Strand 2	I	351	355	parallel

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There are 6 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	25	first strand
Strand 2	J	31	42	anti-parallel
Strand 3	J	85	89	anti-parallel
Strand 4	J	52	56	parallel
Strand 5	J	142	147	parallel
Strand 6	J	169	171	parallel

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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	235	236	first strand
Strand 2	J	269	270	parallel

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There are 2 strands in JC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	325	329	first strand
Strand 2	J	351	355	parallel

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There are 6 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	17	25	first strand
Strand 2	K	31	42	anti-parallel
Strand 3	K	85	89	anti-parallel
Strand 4	K	52	56	parallel
Strand 5	K	142	147	parallel
Strand 6	K	169	171	parallel

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There are 2 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	235	236	first strand
Strand 2	K	269	270	parallel

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There are 2 strands in KC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	325	329	first strand
Strand 2	K	351	355	parallel

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There are 6 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	25	first strand
Strand 2	L	31	42	anti-parallel
Strand 3	L	85	89	anti-parallel
Strand 4	L	52	56	parallel
Strand 5	L	142	147	parallel
Strand 6	L	169	171	parallel

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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	325	329	first strand
Strand 2	L	351	355	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VAV