Analysis of interatomic Contacts of Structural Units in PDB entry:
2VAW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VAW entry

There is 1 chain in PDB entry 2VAW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 2LEU 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2VAW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 32Right-handed alpha
Helix 2
2
A
62 67Right-handed alpha
Helix 3
3
A
74 85Right-handed alpha
Helix 4
4
A
85 94Right-handed alpha
Helix 5
5
A
108 125Right-handed alpha
Helix 6
6
A
136 138Right-handed 310
Helix 7
7
A
139 156Right-handed alpha
Helix 8
8
A
166 174Right-handed alpha
Helix 9
9
A
175 177Right-handed 310
Helix 10
10
A
178 203Right-handed alpha
Helix 11
11
A
210 219Right-handed alpha
Helix 12
12
A
235 246Right-handed alpha
Helix 13
13
A
247 251Right-handed 310
Helix 14
14
A
272 287Right-handed alpha
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There are 2 sheets in PDB entry 2VAW. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
38 44parallel
Strand 3
A
14 19parallel
Strand 4
A
98 104parallel
Strand 5
A
127 134parallel
Strand 6
A
160 165parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 231first strand
Strand 2
A
307 314anti-parallel
Strand 3
A
260 267anti-parallel
Strand 4
A
292 299parallel
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