Analysis of interatomic Contacts of Structural Units in PDB entry:
2VBA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VBA entry

There are 4 chains in PDB entry 2VBA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LEU 404
B
MET 1LEU 404
C
MET 1ASP 406
D
MET 1ALA 139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 2VBA. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
18 29Right-handed alpha
Helix 2
2
A
36 42Right-handed alpha
Helix 3
3
A
61 66Right-handed alpha
Helix 4
4
A
69 87Right-handed alpha
Helix 5
5
A
89 94Right-handed alpha
Helix 6
6
A
109 121Right-handed alpha
Helix 7
7
A
125 130Right-handed alpha
Helix 8
8
A
132 138Right-handed alpha
Helix 9
9
A
140 148Right-handed alpha
Helix 10
10
A
161 163Right-handed 310
Helix 11
11
A
164 179Right-handed alpha
Helix 12
12
A
194 204Right-handed alpha
Helix 13
13
A
214 218Right-handed 310
Helix 14
14
A
243 249Right-handed alpha
Helix 15
15
A
274 286Right-handed alpha
Helix 16
16
A
302 318Right-handed alpha
Helix 17
17
A
327 332Right-handed alpha
Helix 18
18
A
334 336Right-handed 310
Helix 19
19
A
337 353Right-handed alpha
Helix 20
20
B
18 29Right-handed alpha
Helix 21
21
B
36 42Right-handed alpha
Helix 22
22
B
61 66Right-handed alpha
Helix 23
23
B
69 87Right-handed alpha
Helix 24
24
B
89 94Right-handed alpha
Helix 25
25
B
109 121Right-handed alpha
Helix 26
26
B
125 130Right-handed alpha
Helix 27
27
B
132 138Right-handed alpha
Helix 28
28
B
140 148Right-handed alpha
Helix 29
29
B
161 163Right-handed 310
Helix 30
30
B
164 179Right-handed alpha
Helix 31
31
B
194 204Right-handed alpha
Helix 32
32
B
214 218Right-handed 310
Helix 33
33
B
243 249Right-handed alpha
Helix 34
34
B
274 286Right-handed alpha
Helix 35
35
B
302 318Right-handed alpha
Helix 36
36
B
327 332Right-handed alpha
Helix 37
37
B
334 336Right-handed 310
Helix 38
38
B
337 353Right-handed alpha
Helix 39
39
B
365 369Right-handed 310
Helix 40
40
C
18 29Right-handed alpha
Helix 41
41
C
36 42Right-handed alpha
Helix 42
42
C
61 66Right-handed alpha
Helix 43
43
C
69 87Right-handed alpha
Helix 44
44
C
89 94Right-handed alpha
Helix 45
45
C
109 121Right-handed alpha
Helix 46
46
C
125 130Right-handed alpha
Helix 47
47
C
132 138Right-handed alpha
Helix 48
48
C
140 148Right-handed alpha
Helix 49
49
C
161 163Right-handed 310
Helix 50
50
C
164 179Right-handed alpha
Helix 51
51
C
194 204Right-handed alpha
Helix 52
52
C
214 218Right-handed 310
Helix 53
53
C
243 249Right-handed alpha
Helix 54
54
C
274 285Right-handed alpha
Helix 55
55
C
302 318Right-handed alpha
Helix 56
56
C
327 332Right-handed alpha
Helix 57
57
C
334 336Right-handed 310
Helix 58
58
C
337 353Right-handed alpha
Helix 59
59
C
365 369Right-handed 310
Helix 60
60
D
18 29Right-handed alpha
Helix 61
61
D
36 42Right-handed alpha
Helix 62
62
D
61 66Right-handed alpha
Helix 63
63
D
69 87Right-handed alpha
Helix 64
64
D
89 94Right-handed alpha
Helix 65
65
D
109 121Right-handed alpha
Helix 66
66
D
124 130Right-handed alpha
Helix 67
67
D
132 138Right-handed alpha
Helix 68
68
D
140 148Right-handed alpha
Helix 69
69
D
161 163Right-handed 310
Helix 70
70
D
164 179Right-handed alpha
Helix 71
71
D
194 204Right-handed alpha
Helix 72
72
D
214 218Right-handed 310
Helix 73
73
D
243 249Right-handed alpha
Helix 74
74
D
274 286Right-handed alpha
Helix 75
75
D
302 318Right-handed alpha
Helix 76
76
D
327 332Right-handed alpha
Helix 77
77
D
334 336Right-handed 310
Helix 78
78
D
337 353Right-handed alpha
Helix 79
79
D
365 369Right-handed 310
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There are 10 sheets in PDB entry 2VBA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA, CB, CC, A, DB,

There are 21 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
372 373first strand
Strand 2
A
323 325parallel
Strand 3
A
294 296parallel
Strand 4
A
384 391parallel
Strand 5
A
395 402anti-parallel
Strand 6
A
255 264anti-parallel
Strand 7
A
4 12anti-parallel
Strand 8
A
234 242anti-parallel
Strand 9
A
184 191anti-parallel
Strand 10
A
99 104parallel
Strand 11
A
156 160parallel
Strand 12
B
156 160anti-parallel
Strand 13
B
99 104parallel
Strand 14
B
184 191parallel
Strand 15
B
234 242anti-parallel
Strand 16
B
4 12anti-parallel
Strand 17
B
255 264anti-parallel
Strand 18
B
395 402anti-parallel
Strand 19
B
384 391anti-parallel
Strand 20
B
294 296parallel
Strand 21
B
323 325parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
33 35first strand
Strand 2
A
48 50anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
354 355first strand
Strand 2
A
378 379anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
33 35first strand
Strand 2
B
48 50anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
354 355first strand
Strand 2
B
378 379anti-parallel
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There are 21 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
323 325first strand
Strand 2
C
294 296parallel
Strand 3
C
384 391parallel
Strand 4
C
395 402anti-parallel
Strand 5
C
255 264anti-parallel
Strand 6
C
4 12anti-parallel
Strand 7
C
234 242anti-parallel
Strand 8
C
184 191anti-parallel
Strand 9
C
99 104parallel
Strand 10
C
156 160parallel
Strand 11
D
156 160anti-parallel
Strand 12
D
99 104parallel
Strand 13
D
184 191parallel
Strand 14
D
234 242anti-parallel
Strand 15
D
4 12anti-parallel
Strand 16
D
255 264anti-parallel
Strand 17
D
395 402anti-parallel
Strand 18
D
384 391anti-parallel
Strand 19
D
294 296parallel
Strand 20
D
323 325parallel
Strand 21
D
372 373parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
33 35first strand
Strand 2
C
48 50anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
354 355first strand
Strand 2
C
378 379anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
33 35first strand
Strand 2
D
48 50anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
354 355first strand
Strand 2
D
378 379anti-parallel
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