Analysis of interatomic Contacts of Structural Units in PDB entry:
2VBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VBC entry

There are 2 chains in PDB entry 2VBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19LYS 618
B
 ALA 49GLU 63
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2VBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 54Right-handed alpha
Helix 2
2
A
202 214Right-handed alpha
Helix 3
3
A
224 235Right-handed alpha
Helix 4
4
A
262 272Right-handed alpha
Helix 5
5
A
290 306Right-handed alpha
Helix 6
6
A
348 354Right-handed alpha
Helix 7
7
A
364 377Right-handed alpha
Helix 8
8
A
389 394Right-handed alpha
Helix 9
9
A
394 400Right-handed alpha
Helix 10
10
A
409 413Right-handed 310
Helix 11
11
A
450 460Right-handed alpha
Helix 12
12
A
485 496Right-handed alpha
Helix 13
13
A
509 516Right-handed 310
Helix 14
14
A
528 539Right-handed alpha
Helix 15
15
A
543 552Right-handed alpha
Helix 16
16
A
567 571Right-handed 310
Helix 17
17
A
598 601Right-handed 310
Helix 18
18
A
603 616Right-handed alpha
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There are 7 sheets in PDB entry 2VBC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
58 59anti-parallel
Strand 3
B
51 57parallel
Strand 4
A
21 27anti-parallel
Strand 5
A
34 42anti-parallel
Strand 6
A
45 48anti-parallel
Strand 7
A
76 79anti-parallel
Strand 8
A
67 71anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
95 99anti-parallel
Strand 3
A
138 140anti-parallel
Strand 4
A
146 151anti-parallel
Strand 5
A
163 166anti-parallel
Strand 6
A
122 126anti-parallel
Strand 7
A
115 117anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
310 314parallel
Strand 3
A
280 284parallel
Strand 4
A
218 222parallel
Strand 5
A
257 261parallel
Strand 6
A
240 242parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
470 474parallel
Strand 3
A
421 424parallel
Strand 4
A
358 361parallel
Strand 5
A
404 407parallel
Strand 6
A
382 385parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 435first strand
Strand 2
A
439 448anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 574first strand
Strand 2
A
577 578anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 582first strand
Strand 2
A
588 590anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il