Analysis of interatomic Contacts of Structural Units in PDB entry:
2VBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VBG entry

There are 2 chains in PDB entry 2VBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -14LYS 547
B
 HIS -14LYS 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 2VBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
25 27Right-handed 310
Helix 3
3
A
28 38Right-handed alpha
Helix 4
4
A
48 64Right-handed alpha
Helix 5
5
A
73 89Right-handed alpha
Helix 6
6
A
101 108Right-handed alpha
Helix 7
7
A
121 127Right-handed alpha
Helix 8
8
A
128 131Right-handed 310
Helix 9
9
A
141 157Right-handed alpha
Helix 10
10
A
166 170Right-handed alpha
Helix 11
11
A
188 205Right-handed alpha
Helix 12
12
A
213 219Right-handed alpha
Helix 13
13
A
221 233Right-handed alpha
Helix 14
14
A
258 262Right-handed 310
Helix 15
15
A
263 273Right-handed alpha
Helix 16
16
A
284 288Right-handed 310
Helix 17
17
A
296 298Right-handed 310
Helix 18
18
A
319 326Right-handed alpha
Helix 19
19
A
327 330Right-handed 310
Helix 20
20
A
355 367Right-handed alpha
Helix 21
21
A
378 385Right-handed alpha
Helix 22
22
A
406 418Right-handed alpha
Helix 23
23
A
429 436Right-handed alpha
Helix 24
24
A
438 445Right-handed alpha
Helix 25
25
A
459 466Right-handed alpha
Helix 26
26
A
470 474Right-handed 310
Helix 27
27
A
479 481Right-handed 310
Helix 28
28
A
482 487Right-handed alpha
Helix 29
29
A
501 515Right-handed alpha
Helix 30
30
A
532 546Right-handed alpha
Helix 31
31
B
3 15Right-handed alpha
Helix 32
32
B
25 27Right-handed 310
Helix 33
33
B
28 38Right-handed alpha
Helix 34
34
B
48 64Right-handed alpha
Helix 35
35
B
73 89Right-handed alpha
Helix 36
36
B
101 107Right-handed alpha
Helix 37
37
B
121 127Right-handed alpha
Helix 38
38
B
128 131Right-handed 310
Helix 39
39
B
141 157Right-handed alpha
Helix 40
40
B
166 170Right-handed alpha
Helix 41
41
B
188 205Right-handed alpha
Helix 42
42
B
213 219Right-handed alpha
Helix 43
43
B
221 233Right-handed alpha
Helix 44
44
B
258 262Right-handed 310
Helix 45
45
B
263 273Right-handed alpha
Helix 46
46
B
284 288Right-handed 310
Helix 47
47
B
296 298Right-handed 310
Helix 48
48
B
319 325Right-handed alpha
Helix 49
49
B
326 330Right-handed 310
Helix 50
50
B
355 367Right-handed alpha
Helix 51
51
B
378 385Right-handed alpha
Helix 52
52
B
406 418Right-handed alpha
Helix 53
53
B
429 436Right-handed alpha
Helix 54
54
B
438 445Right-handed alpha
Helix 55
55
B
459 466Right-handed alpha
Helix 56
56
B
470 474Right-handed 310
Helix 57
57
B
479 481Right-handed 310
Helix 58
58
B
482 487Right-handed alpha
Helix 59
59
B
501 515Right-handed alpha
Helix 60
60
B
532 546Right-handed alpha
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There are 6 sheets in PDB entry 2VBG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
19 22parallel
Strand 3
A
66 71parallel
Strand 4
A
93 99parallel
Strand 5
A
160 165parallel
Strand 6
A
133 136parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
236 238parallel
Strand 3
A
208 212parallel
Strand 4
A
275 279parallel
Strand 5
A
300 303parallel
Strand 6
A
308 310anti-parallel
Strand 7
A
313 315anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 396first strand
Strand 2
A
371 375parallel
Strand 3
A
422 428parallel
Strand 4
A
450 455parallel
Strand 5
A
519 525parallel
Strand 6
A
494 499parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
19 22parallel
Strand 3
B
66 71parallel
Strand 4
B
93 99parallel
Strand 5
B
160 165parallel
Strand 6
B
133 136parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 256first strand
Strand 2
B
236 238parallel
Strand 3
B
208 212parallel
Strand 4
B
275 279parallel
Strand 5
B
300 303parallel
Strand 6
B
308 310anti-parallel
Strand 7
B
313 315anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 396first strand
Strand 2
B
371 375parallel
Strand 3
B
422 428parallel
Strand 4
B
450 455parallel
Strand 5
B
519 525parallel
Strand 6
B
494 499parallel
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