Analysis of interatomic Contacts of Structural Units in PDB entry:
2VBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VBT entry

There is 1 chain in PDB entry 2VBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2VBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 24Right-handed alpha
Helix 2
2
A
24 36Right-handed alpha
Helix 3
3
A
53 57Right-handed 310
Helix 4
4
A
113 119Right-handed alpha
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There are 2 sheets in PDB entry 2VBT. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 16 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 12first strand
Strand 2
A
125 131anti-parallel
Strand 3
A
75 84anti-parallel
Strand 4
A
60 61anti-parallel
Strand 5
A
44 47first strand
Strand 6
A
4 12anti-parallel
Strand 7
A
60 61first strand
Strand 8
A
75 84anti-parallel
Strand 9
A
75 84first strand
Strand 10
A
60 61anti-parallel
Strand 11
A
87 96first strand
Strand 12
A
75 84parallel
Strand 13
A
105 109first strand
Strand 14
A
44 47anti-parallel
Strand 15
A
125 131first strand
Strand 16
A
4 12anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
70 72anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il