Analysis of interatomic Contacts of Structural Units in PDB entry:
2VBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VBY entry

There are 2 chains in PDB entry 2VBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4PRO 150
B
 ALA 4PRO 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2VBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 19Right-handed alpha
Helix 2
2
A
23 32Right-handed alpha
Helix 3
3
A
34 48Right-handed alpha
Helix 4
4
A
60 64Right-handed 310
Helix 5
5
A
83 89Right-handed alpha
Helix 6
6
A
114 130Right-handed alpha
Helix 7
7
B
7 19Right-handed alpha
Helix 8
8
B
23 31Right-handed alpha
Helix 9
9
B
34 48Right-handed alpha
Helix 10
10
B
83 90Right-handed alpha
Helix 11
11
B
114 129Right-handed alpha
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There are 2 sheets in PDB entry 2VBY. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 58first strand
Strand 2
B
51 58anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 75first strand
Strand 2
A
106 112anti-parallel
Strand 3
A
94 100anti-parallel
Strand 4
B
131 143anti-parallel
Strand 5
B
67 75anti-parallel
Strand 6
B
106 112anti-parallel
Strand 7
B
94 101anti-parallel
Strand 8
A
131 143anti-parallel
Strand 9
A
67 75anti-parallel
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