Analysis of interatomic Contacts of Structural Units in PDB entry:
2VC5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VC5 entry

There are 8 chains in PDB entry 2VC5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 136
A	ILE 138	SER 314
B	MET 1	VAL 136
B	ILE 138	SER 314
C	MET 1	VAL 136
C	ILE 138	SER 314
D	MET 1	VAL 136
D	ILE 138	SER 314

There are 76 helices in PDB entry 2VC5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	16	Right-handed 310
Helix 2	2	A	29	36	Right-handed alpha
Helix 3	3	A	37	40	Right-handed 310
Helix 4	4	A	41	59	Right-handed alpha
Helix 5	5	A	75	85	Right-handed alpha
Helix 6	6	A	103	107	Right-handed 310
Helix 7	7	A	110	124	Right-handed alpha
Helix 8	8	A	146	164	Right-handed alpha
Helix 9	9	A	176	188	Right-handed alpha
Helix 10	10	A	191	193	Right-handed 310
Helix 11	11	A	199	203	Right-handed 310
Helix 12	12	A	205	215	Right-handed alpha
Helix 13	13	A	231	245	Right-handed alpha
Helix 14	14	A	263	267	Right-handed 310
Helix 15	15	A	267	269	Right-handed 310
Helix 16	16	A	270	275	Right-handed alpha
Helix 17	17	A	281	286	Right-handed alpha
Helix 18	18	A	286	293	Right-handed alpha
Helix 19	19	A	297	306	Right-handed alpha
Helix 20	20	A	306	313	Right-handed alpha
Helix 21	21	B	13	17	Right-handed 310
Helix 22	22	B	29	36	Right-handed alpha
Helix 23	23	B	37	40	Right-handed 310
Helix 24	24	B	41	59	Right-handed alpha
Helix 25	25	B	75	87	Right-handed alpha
Helix 26	26	B	103	107	Right-handed 310
Helix 27	27	B	110	124	Right-handed alpha
Helix 28	28	B	146	164	Right-handed alpha
Helix 29	29	B	176	188	Right-handed alpha
Helix 30	30	B	191	193	Right-handed 310
Helix 31	31	B	199	203	Right-handed 310
Helix 32	32	B	205	215	Right-handed alpha
Helix 33	33	B	231	245	Right-handed alpha
Helix 34	34	B	263	267	Right-handed 310
Helix 35	35	B	267	269	Right-handed 310
Helix 36	36	B	270	275	Right-handed alpha
Helix 37	37	B	281	286	Right-handed alpha
Helix 38	38	B	286	293	Right-handed alpha
Helix 39	39	B	297	306	Right-handed alpha
Helix 40	40	B	306	313	Right-handed alpha
Helix 41	41	C	12	16	Right-handed 310
Helix 42	42	C	29	36	Right-handed alpha
Helix 43	43	C	37	40	Right-handed 310
Helix 44	44	C	41	60	Right-handed alpha
Helix 45	45	C	75	87	Right-handed alpha
Helix 46	46	C	103	107	Right-handed 310
Helix 47	47	C	110	124	Right-handed alpha
Helix 48	48	C	146	164	Right-handed alpha
Helix 49	49	C	176	188	Right-handed alpha
Helix 50	50	C	191	193	Right-handed 310
Helix 51	51	C	205	215	Right-handed alpha
Helix 52	52	C	231	243	Right-handed alpha
Helix 53	53	C	281	286	Right-handed alpha
Helix 54	54	C	286	294	Right-handed alpha
Helix 55	55	C	297	306	Right-handed alpha
Helix 56	56	C	306	314	Right-handed alpha
Helix 57	57	D	12	16	Right-handed 310
Helix 58	58	D	29	36	Right-handed alpha
Helix 59	59	D	37	40	Right-handed 310
Helix 60	60	D	41	59	Right-handed alpha
Helix 61	61	D	75	84	Right-handed alpha
Helix 62	62	D	103	107	Right-handed 310
Helix 63	63	D	110	124	Right-handed alpha
Helix 64	64	D	146	164	Right-handed alpha
Helix 65	65	D	176	188	Right-handed alpha
Helix 66	66	D	191	193	Right-handed 310
Helix 67	67	D	199	203	Right-handed 310
Helix 68	68	D	205	215	Right-handed alpha
Helix 69	69	D	231	244	Right-handed alpha
Helix 70	70	D	247	249	Right-handed 310
Helix 71	71	D	267	269	Right-handed 310
Helix 72	72	D	270	275	Right-handed alpha
Helix 73	73	D	281	286	Right-handed alpha
Helix 74	74	D	286	291	Right-handed alpha
Helix 75	75	D	297	306	Right-handed alpha
Helix 76	76	D	306	314	Right-handed alpha

There are 10 sheets in PDB entry 2VC5. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, CA, CB, A, DB, C,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	63	66	parallel
Strand 3	A	89	92	parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	136	139	parallel
Strand 3	A	167	170	parallel
Strand 4	A	195	197	parallel
Strand 5	A	218	221	parallel
Strand 6	A	251	253	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	8	11	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	63	65	parallel
Strand 3	B	89	91	parallel

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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	136	139	parallel
Strand 3	B	167	170	parallel
Strand 4	B	195	197	parallel
Strand 5	B	218	221	parallel
Strand 6	B	251	253	parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	63	66	parallel
Strand 3	C	89	92	parallel

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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	C	136	139	parallel
Strand 3	C	167	170	parallel
Strand 4	C	195	197	parallel
Strand 5	C	218	221	parallel
Strand 6	C	251	253	parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	8	11	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	20	first strand
Strand 2	D	63	66	parallel
Strand 3	D	89	92	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	136	138	parallel
Strand 3	D	167	169	parallel
Strand 4	D	195	197	parallel
Strand 5	D	218	221	parallel
Strand 6	D	251	253	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VC5

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VC5