Analysis of interatomic Contacts of Structural Units in PDB entry:
2VC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VC6 entry

There are 4 chains in PDB entry 2VC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 160
A
 ASP 162LEU 292
B
 MET 1VAL 160
B
 ASP 162LEU 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2VC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 33Right-handed alpha
Helix 2
2
A
42 46Right-handed 310
Helix 3
3
A
46 50Right-handed 310
Helix 4
4
A
51 67Right-handed alpha
Helix 5
5
A
80 94Right-handed alpha
Helix 6
6
A
110 125Right-handed alpha
Helix 7
7
A
134 139Right-handed alpha
Helix 8
8
A
143 154Right-handed alpha
Helix 9
9
A
167 177Right-handed alpha
Helix 10
10
A
187 189Right-handed 310
Helix 11
11
A
190 197Right-handed alpha
Helix 12
12
A
205 209Right-handed 310
Helix 13
13
A
210 223Right-handed alpha
Helix 14
14
A
225 243Right-handed alpha
Helix 15
15
A
249 259Right-handed alpha
Helix 16
16
A
274 288Right-handed alpha
Helix 17
17
B
19 33Right-handed alpha
Helix 18
18
B
46 50Right-handed 310
Helix 19
19
B
51 67Right-handed alpha
Helix 20
20
B
80 94Right-handed alpha
Helix 21
21
B
110 124Right-handed alpha
Helix 22
22
B
134 139Right-handed alpha
Helix 23
23
B
143 154Right-handed alpha
Helix 24
24
B
167 177Right-handed alpha
Helix 25
25
B
187 189Right-handed 310
Helix 26
26
B
190 197Right-handed alpha
Helix 27
27
B
205 209Right-handed 310
Helix 28
28
B
210 223Right-handed alpha
Helix 29
29
B
225 243Right-handed alpha
Helix 30
30
B
249 259Right-handed alpha
Helix 31
31
B
274 288Right-handed alpha
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There are 4 sheets in PDB entry 2VC6. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
4 8parallel
Strand 3
A
201 204parallel
Strand 4
A
182 185parallel
Strand 5
A
157 160parallel
Strand 6
A
129 132parallel
Strand 7
A
98 102parallel
Strand 8
A
73 75parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
17 18anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
4 8parallel
Strand 3
B
201 204parallel
Strand 4
B
182 185parallel
Strand 5
B
157 160parallel
Strand 6
B
129 132parallel
Strand 7
B
98 102parallel
Strand 8
B
73 75parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
17 18anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il