Analysis of interatomic Contacts of Structural Units in PDB entry:
2VCB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VCB entry

There is 1 chain in PDB entry 2VCB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26ILE 910
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 2VCB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 50Right-handed 310
Helix 2
2
A
171 174Right-handed 310
Helix 3
3
A
175 187Right-handed alpha
Helix 4
4
A
187 207Right-handed alpha
Helix 5
5
A
208 213Right-handed 310
Helix 6
6
A
245 261Right-handed alpha
Helix 7
7
A
301 306Right-handed alpha
Helix 8
8
A
311 325Right-handed alpha
Helix 9
9
A
335 345Right-handed alpha
Helix 10
10
A
346 348Right-handed 310
Helix 11
11
A
350 358Right-handed alpha
Helix 12
12
A
363 369Right-handed alpha
Helix 13
13
A
382 402Right-handed alpha
Helix 14
14
A
417 422Right-handed alpha
Helix 15
15
A
452 470Right-handed alpha
Helix 16
16
A
491 507Right-handed alpha
Helix 17
17
A
522 527Right-handed alpha
Helix 18
18
A
531 533Right-handed 310
Helix 19
19
A
548 553Right-handed alpha
Helix 20
20
A
575 589Right-handed alpha
Helix 21
21
A
606 616Right-handed alpha
Helix 22
22
A
617 619Right-handed 310
Helix 23
23
A
624 638Right-handed alpha
Helix 24
24
A
641 654Right-handed alpha
Helix 25
25
A
669 673Right-handed 310
Helix 26
26
A
693 707Right-handed alpha
Helix 27
27
A
707 712Right-handed alpha
Helix 28
28
A
714 746Right-handed alpha
Helix 29
29
A
749 771Right-handed alpha
Helix 30
30
A
772 776Right-handed 310
Helix 31
31
A
777 788Right-handed alpha
Helix 32
32
A
793 808Right-handed alpha
Helix 33
33
A
813 818Right-handed alpha
Helix 34
34
A
832 837Right-handed alpha
Helix 35
35
A
837 854Right-handed alpha
Helix 36
36
A
863 873Right-handed alpha
Helix 37
37
A
890 902Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 2VCB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
66 83anti-parallel
Strand 3
A
120 139anti-parallel
Strand 4
A
90 97anti-parallel
Strand 5
A
104 109anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
66 83anti-parallel
Strand 3
A
149 156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
146 147anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 219first strand
Strand 2
A
239 243parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
286 289anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 297first strand
Strand 2
A
593 598parallel
Strand 3
A
558 562parallel
Strand 4
A
535 539parallel
Strand 5
A
511 516parallel
Strand 6
A
475 477parallel
Strand 7
A
404 408parallel
Strand 8
A
329 331parallel
Strand 9
A
294 297parallel
Back to list of sheets
Back to top of page

There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
440 442anti-parallel
Strand 3
A
427 428anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
436 437anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il