Analysis of interatomic Contacts of Structural Units in PDB entry:
2VCG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VCG entry

There are 4 chains in PDB entry 2VCG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 7ILE 374
B
 ALA 8ARG 375
C
 ALA 8ARG 375
D
 MET 1ARG 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 2VCG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 20Right-handed 310
Helix 2
2
A
46 59Right-handed alpha
Helix 3
3
A
60 65Right-handed 310
Helix 4
4
A
74 80Right-handed alpha
Helix 5
5
A
83 96Right-handed alpha
Helix 6
6
A
113 133Right-handed alpha
Helix 7
7
A
162 174Right-handed alpha
Helix 8
8
A
190 197Right-handed alpha
Helix 9
9
A
226 230Right-handed 310
Helix 10
10
A
243 254Right-handed alpha
Helix 11
11
A
254 263Right-handed alpha
Helix 12
12
A
287 306Right-handed alpha
Helix 13
13
A
322 336Right-handed alpha
Helix 14
14
A
344 350Right-handed alpha
Helix 15
15
A
357 366Right-handed alpha
Helix 16
16
A
367 374Right-handed 310
Helix 17
17
B
14 20Right-handed 310
Helix 18
18
B
46 59Right-handed alpha
Helix 19
19
B
60 65Right-handed 310
Helix 20
20
B
74 80Right-handed alpha
Helix 21
21
B
83 94Right-handed alpha
Helix 22
22
B
113 133Right-handed alpha
Helix 23
23
B
162 174Right-handed alpha
Helix 24
24
B
190 197Right-handed alpha
Helix 25
25
B
226 230Right-handed 310
Helix 26
26
B
243 254Right-handed alpha
Helix 27
27
B
254 263Right-handed alpha
Helix 28
28
B
287 306Right-handed alpha
Helix 29
29
B
322 336Right-handed alpha
Helix 30
30
B
344 350Right-handed alpha
Helix 31
31
B
357 366Right-handed alpha
Helix 32
32
B
367 374Right-handed 310
Helix 33
33
C
14 20Right-handed 310
Helix 34
34
C
46 59Right-handed alpha
Helix 35
35
C
60 65Right-handed 310
Helix 36
36
C
74 80Right-handed alpha
Helix 37
37
C
83 96Right-handed alpha
Helix 38
38
C
113 133Right-handed alpha
Helix 39
39
C
162 174Right-handed alpha
Helix 40
40
C
190 197Right-handed alpha
Helix 41
41
C
226 230Right-handed 310
Helix 42
42
C
243 254Right-handed alpha
Helix 43
43
C
254 263Right-handed alpha
Helix 44
44
C
287 306Right-handed alpha
Helix 45
45
C
322 336Right-handed alpha
Helix 46
46
C
344 350Right-handed alpha
Helix 47
47
C
357 366Right-handed alpha
Helix 48
48
C
367 374Right-handed 310
Helix 49
49
D
14 20Right-handed 310
Helix 50
50
D
46 59Right-handed alpha
Helix 51
51
D
60 65Right-handed 310
Helix 52
52
D
74 80Right-handed alpha
Helix 53
53
D
83 96Right-handed alpha
Helix 54
54
D
112 133Right-handed alpha
Helix 55
55
D
162 174Right-handed alpha
Helix 56
56
D
190 198Right-handed alpha
Helix 57
57
D
226 230Right-handed 310
Helix 58
58
D
243 254Right-handed alpha
Helix 59
59
D
254 263Right-handed alpha
Helix 60
60
D
287 306Right-handed alpha
Helix 61
61
D
322 336Right-handed alpha
Helix 62
62
D
344 350Right-handed alpha
Helix 63
63
D
357 366Right-handed alpha
Helix 64
64
D
367 374Right-handed 310
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There are 7 sheets in PDB entry 2VCG. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA, CB, A, DB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
9 12parallel
Strand 3
A
138 141parallel
Strand 4
A
310 314parallel
Strand 5
A
266 271parallel
Strand 6
A
180 184parallel
Strand 7
A
203 210parallel
Strand 8
A
233 238parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
108 109anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
9 12parallel
Strand 3
B
138 141parallel
Strand 4
B
310 314parallel
Strand 5
B
266 271parallel
Strand 6
B
180 184parallel
Strand 7
B
203 210parallel
Strand 8
B
233 238parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
9 12parallel
Strand 3
C
138 141parallel
Strand 4
C
310 314parallel
Strand 5
C
267 271parallel
Strand 6
C
180 184parallel
Strand 7
C
203 210parallel
Strand 8
C
233 238parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
C
108 109anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
9 12parallel
Strand 3
D
138 141parallel
Strand 4
D
310 314parallel
Strand 5
D
267 271parallel
Strand 6
D
180 184parallel
Strand 7
D
203 210parallel
Strand 8
D
233 238parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
100 101first strand
Strand 2
D
108 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il