Analysis of interatomic Contacts of Structural Units in PDB entry:
2VCH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VCH entry

There is 1 chain in PDB entry 2VCH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6GLN 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2VCH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 35Right-handed alpha
Helix 2
2
A
51 57Right-handed alpha
Helix 3
3
A
81 92Right-handed alpha
Helix 4
4
A
93 107Right-handed alpha
Helix 5
5
A
120 122Right-handed 310
Helix 6
6
A
123 130Right-handed alpha
Helix 7
7
A
141 158Right-handed alpha
Helix 8
8
A
161 165Right-handed 310
Helix 9
9
A
178 182Right-handed 310
Helix 10
10
A
183 187Right-handed 310
Helix 11
11
A
191 204Right-handed alpha
Helix 12
12
A
205 207Right-handed 310
Helix 13
13
A
219 228Right-handed alpha
Helix 14
14
A
256 264Right-handed alpha
Helix 15
15
A
282 296Right-handed alpha
Helix 16
16
A
323 328Right-handed 310
Helix 17
17
A
331 336Right-handed alpha
Helix 18
18
A
348 355Right-handed alpha
Helix 19
19
A
366 377Right-handed alpha
Helix 20
20
A
388 399Right-handed alpha
Helix 21
21
A
415 428Right-handed alpha
Helix 22
22
A
430 450Right-handed alpha
Helix 23
23
A
454 476Right-handed alpha
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There are 2 sheets in PDB entry 2VCH. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
37 42parallel
Strand 3
A
8 12parallel
Strand 4
A
113 116parallel
Strand 5
A
134 138parallel
Strand 6
A
209 212parallel
Strand 7
A
236 238parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 344first strand
Strand 2
A
299 304parallel
Strand 3
A
270 274parallel
Strand 4
A
358 363parallel
Strand 5
A
380 382parallel
Strand 6
A
403 404parallel
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