Analysis of interatomic Contacts of Structural Units in PDB entry:
2VCV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VCV entry

There are 16 chains in PDB entry 2VCV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	PHE 222
B	LYS 4	PHE 222
C	LYS 4	PHE 222
D	LYS 4	PHE 222
E	LYS 4	PHE 222
F	LYS 4	PHE 222
G	LYS 4	PHE 222
H	LYS 4	PHE 222
I	LYS 4	PHE 222
J	LYS 4	PHE 222
K	LYS 4	PHE 222
L	LYS 4	PHE 222
M	LYS 4	PHE 222
N	LYS 4	PHE 222
O	LYS 4	PHE 222
P	LYS 4	PHE 222

There are176 helices in PDB entry 2VCV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	16	26	Right-handed alpha
Helix 2	2	A	37	47	Right-handed alpha
Helix 3	3	A	67	79	Right-handed alpha
Helix 4	4	A	85	109	Right-handed alpha
Helix 5	5	A	110	112	Right-handed 310
Helix 6	6	A	113	131	Right-handed alpha
Helix 7	7	A	131	144	Right-handed alpha
Helix 8	8	A	154	171	Right-handed alpha
Helix 9	9	A	178	191	Right-handed alpha
Helix 10	10	A	191	198	Right-handed alpha
Helix 11	11	A	209	221	Right-handed alpha
Helix 12	12	B	16	26	Right-handed alpha
Helix 13	13	B	37	47	Right-handed alpha
Helix 14	14	B	67	79	Right-handed alpha
Helix 15	15	B	85	109	Right-handed alpha
Helix 16	16	B	110	112	Right-handed 310
Helix 17	17	B	116	131	Right-handed alpha
Helix 18	18	B	131	144	Right-handed alpha
Helix 19	19	B	154	171	Right-handed alpha
Helix 20	20	B	178	190	Right-handed alpha
Helix 21	21	B	191	199	Right-handed alpha
Helix 22	22	B	209	221	Right-handed alpha
Helix 23	23	C	16	26	Right-handed alpha
Helix 24	24	C	37	46	Right-handed alpha
Helix 25	25	C	67	79	Right-handed alpha
Helix 26	26	C	85	108	Right-handed alpha
Helix 27	27	C	109	112	Right-handed 310
Helix 28	28	C	113	131	Right-handed alpha
Helix 29	29	C	131	144	Right-handed alpha
Helix 30	30	C	154	171	Right-handed alpha
Helix 31	31	C	178	190	Right-handed alpha
Helix 32	32	C	191	199	Right-handed alpha
Helix 33	33	C	209	221	Right-handed alpha
Helix 34	34	D	16	27	Right-handed alpha
Helix 35	35	D	37	47	Right-handed alpha
Helix 36	36	D	67	79	Right-handed alpha
Helix 37	37	D	85	108	Right-handed alpha
Helix 38	38	D	109	112	Right-handed 310
Helix 39	39	D	113	131	Right-handed alpha
Helix 40	40	D	131	144	Right-handed alpha
Helix 41	41	D	154	171	Right-handed alpha
Helix 42	42	D	178	190	Right-handed alpha
Helix 43	43	D	191	199	Right-handed alpha
Helix 44	44	D	209	221	Right-handed alpha
Helix 45	45	E	16	26	Right-handed alpha
Helix 46	46	E	37	47	Right-handed alpha
Helix 47	47	E	67	79	Right-handed alpha
Helix 48	48	E	85	108	Right-handed alpha
Helix 49	49	E	109	112	Right-handed 310
Helix 50	50	E	113	131	Right-handed alpha
Helix 51	51	E	131	144	Right-handed alpha
Helix 52	52	E	154	171	Right-handed alpha
Helix 53	53	E	178	190	Right-handed alpha
Helix 54	54	E	191	199	Right-handed alpha
Helix 55	55	E	209	221	Right-handed alpha
Helix 56	56	F	16	26	Right-handed alpha
Helix 57	57	F	37	47	Right-handed alpha
Helix 58	58	F	67	79	Right-handed alpha
Helix 59	59	F	85	108	Right-handed alpha
Helix 60	60	F	109	112	Right-handed 310
Helix 61	61	F	113	131	Right-handed alpha
Helix 62	62	F	131	144	Right-handed alpha
Helix 63	63	F	154	171	Right-handed alpha
Helix 64	64	F	178	191	Right-handed alpha
Helix 65	65	F	191	198	Right-handed alpha
Helix 66	66	F	209	221	Right-handed alpha
Helix 67	67	G	16	26	Right-handed alpha
Helix 68	68	G	37	47	Right-handed alpha
Helix 69	69	G	67	79	Right-handed alpha
Helix 70	70	G	85	108	Right-handed alpha
Helix 71	71	G	109	112	Right-handed 310
Helix 72	72	G	113	131	Right-handed alpha
Helix 73	73	G	131	144	Right-handed alpha
Helix 74	74	G	154	171	Right-handed alpha
Helix 75	75	G	178	191	Right-handed alpha
Helix 76	76	G	191	199	Right-handed alpha
Helix 77	77	G	209	221	Right-handed alpha
Helix 78	78	H	16	26	Right-handed alpha
Helix 79	79	H	37	47	Right-handed alpha
Helix 80	80	H	67	79	Right-handed alpha
Helix 81	81	H	85	108	Right-handed alpha
Helix 82	82	H	109	112	Right-handed 310
Helix 83	83	H	113	131	Right-handed alpha
Helix 84	84	H	131	144	Right-handed alpha
Helix 85	85	H	154	171	Right-handed alpha
Helix 86	86	H	178	191	Right-handed alpha
Helix 87	87	H	191	199	Right-handed alpha
Helix 88	88	H	209	221	Right-handed alpha
Helix 89	89	I	16	27	Right-handed alpha
Helix 90	90	I	37	47	Right-handed alpha
Helix 91	91	I	67	79	Right-handed alpha
Helix 92	92	I	85	109	Right-handed alpha
Helix 93	93	I	110	112	Right-handed 310
Helix 94	94	I	113	131	Right-handed alpha
Helix 95	95	I	131	144	Right-handed alpha
Helix 96	96	I	154	171	Right-handed alpha
Helix 97	97	I	178	190	Right-handed alpha
Helix 98	98	I	191	199	Right-handed alpha
Helix 99	99	I	209	221	Right-handed alpha
Helix 100	100	J	16	27	Right-handed alpha
Helix 101	101	J	37	47	Right-handed alpha
Helix 102	102	J	67	79	Right-handed alpha
Helix 103	103	J	85	108	Right-handed alpha
Helix 104	104	J	109	112	Right-handed 310
Helix 105	105	J	116	131	Right-handed alpha
Helix 106	106	J	131	144	Right-handed alpha
Helix 107	107	J	154	171	Right-handed alpha
Helix 108	108	J	178	190	Right-handed alpha
Helix 109	109	J	191	199	Right-handed alpha
Helix 110	110	J	209	221	Right-handed alpha
Helix 111	111	K	16	26	Right-handed alpha
Helix 112	112	K	37	47	Right-handed alpha
Helix 113	113	K	67	79	Right-handed alpha
Helix 114	114	K	85	109	Right-handed alpha
Helix 115	115	K	110	112	Right-handed 310
Helix 116	116	K	113	131	Right-handed alpha
Helix 117	117	K	131	144	Right-handed alpha
Helix 118	118	K	154	171	Right-handed alpha
Helix 119	119	K	178	191	Right-handed alpha
Helix 120	120	K	191	198	Right-handed alpha
Helix 121	121	K	209	221	Right-handed alpha
Helix 122	122	L	16	26	Right-handed alpha
Helix 123	123	L	37	47	Right-handed alpha
Helix 124	124	L	67	79	Right-handed alpha
Helix 125	125	L	85	108	Right-handed alpha
Helix 126	126	L	109	112	Right-handed 310
Helix 127	127	L	116	131	Right-handed alpha
Helix 128	128	L	131	144	Right-handed alpha
Helix 129	129	L	154	171	Right-handed alpha
Helix 130	130	L	178	190	Right-handed alpha
Helix 131	131	L	191	199	Right-handed alpha
Helix 132	132	L	209	221	Right-handed alpha
Helix 133	133	M	16	27	Right-handed alpha
Helix 134	134	M	37	47	Right-handed alpha
Helix 135	135	M	67	79	Right-handed alpha
Helix 136	136	M	85	108	Right-handed alpha
Helix 137	137	M	109	112	Right-handed 310
Helix 138	138	M	116	131	Right-handed alpha
Helix 139	139	M	131	144	Right-handed alpha
Helix 140	140	M	154	171	Right-handed alpha
Helix 141	141	M	178	190	Right-handed alpha
Helix 142	142	M	191	199	Right-handed alpha
Helix 143	143	M	209	221	Right-handed alpha
Helix 144	144	N	16	26	Right-handed alpha
Helix 145	145	N	37	47	Right-handed alpha
Helix 146	146	N	67	79	Right-handed alpha
Helix 147	147	N	85	108	Right-handed alpha
Helix 148	148	N	109	112	Right-handed 310
Helix 149	149	N	116	131	Right-handed alpha
Helix 150	150	N	131	144	Right-handed alpha
Helix 151	151	N	154	171	Right-handed alpha
Helix 152	152	N	178	190	Right-handed alpha
Helix 153	153	N	191	199	Right-handed alpha
Helix 154	154	N	209	221	Right-handed alpha
Helix 155	155	O	16	27	Right-handed alpha
Helix 156	156	O	37	47	Right-handed alpha
Helix 157	157	O	67	79	Right-handed alpha
Helix 158	158	O	85	109	Right-handed alpha
Helix 159	159	O	110	112	Right-handed 310
Helix 160	160	O	113	131	Right-handed alpha
Helix 161	161	O	131	144	Right-handed alpha
Helix 162	162	O	154	171	Right-handed alpha
Helix 163	163	O	178	191	Right-handed alpha
Helix 164	164	O	191	199	Right-handed alpha
Helix 165	165	O	209	221	Right-handed alpha
Helix 166	166	P	16	26	Right-handed alpha
Helix 167	167	P	37	47	Right-handed alpha
Helix 168	168	P	67	79	Right-handed alpha
Helix 169	169	P	85	108	Right-handed alpha
Helix 170	170	P	109	112	Right-handed 310
Helix 171	171	P	113	131	Right-handed alpha
Helix 172	172	P	131	144	Right-handed alpha
Helix 173	173	P	154	171	Right-handed alpha
Helix 174	174	P	178	190	Right-handed alpha
Helix 175	175	P	191	199	Right-handed alpha
Helix 176	176	P	209	221	Right-handed alpha

There are 16 sheets in PDB entry 2VCV. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA, IA, JA, KA, LA, MA, NA, OA, PA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	6	9	parallel
Strand 3	A	57	60	anti-parallel
Strand 4	A	63	66	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	6	9	parallel
Strand 3	B	57	60	anti-parallel
Strand 4	B	63	66	anti-parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	6	9	parallel
Strand 3	C	57	60	anti-parallel
Strand 4	C	63	66	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	6	9	parallel
Strand 3	D	57	60	anti-parallel
Strand 4	D	63	66	anti-parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	35	first strand
Strand 2	E	6	10	parallel
Strand 3	E	57	60	anti-parallel
Strand 4	E	63	66	anti-parallel

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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	34	first strand
Strand 2	F	6	9	parallel
Strand 3	F	57	60	anti-parallel
Strand 4	F	63	66	anti-parallel

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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	35	first strand
Strand 2	G	6	10	parallel
Strand 3	G	57	60	anti-parallel
Strand 4	G	63	66	anti-parallel

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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	35	first strand
Strand 2	H	6	10	parallel
Strand 3	H	57	60	anti-parallel
Strand 4	H	63	66	anti-parallel

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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	31	34	first strand
Strand 2	I	6	9	parallel
Strand 3	I	57	60	anti-parallel
Strand 4	I	63	66	anti-parallel

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There are 4 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	31	35	first strand
Strand 2	J	6	10	parallel
Strand 3	J	57	60	anti-parallel
Strand 4	J	63	66	anti-parallel

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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	31	34	first strand
Strand 2	K	6	9	parallel
Strand 3	K	57	60	anti-parallel
Strand 4	K	63	66	anti-parallel

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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	31	34	first strand
Strand 2	L	6	9	parallel
Strand 3	L	57	60	anti-parallel
Strand 4	L	63	66	anti-parallel

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There are 4 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	31	34	first strand
Strand 2	M	6	9	parallel
Strand 3	M	57	60	anti-parallel
Strand 4	M	63	66	anti-parallel

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There are 4 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	31	34	first strand
Strand 2	N	6	9	parallel
Strand 3	N	57	60	anti-parallel
Strand 4	N	63	66	anti-parallel

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There are 4 strands in OA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	31	34	first strand
Strand 2	O	6	9	parallel
Strand 3	O	57	60	anti-parallel
Strand 4	O	63	66	anti-parallel

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There are 4 strands in PA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	31	34	first strand
Strand 2	P	6	9	parallel
Strand 3	P	57	60	anti-parallel
Strand 4	P	63	66	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VCV

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VCV