Analysis of interatomic Contacts of Structural Units in PDB entry:
2VCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VCY entry

There are 2 chains in PDB entry 2VCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 42MET 373
B
 ARG 42MET 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2VCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 58Right-handed alpha
Helix 2
2
A
83 92Right-handed alpha
Helix 3
3
A
157 165Right-handed alpha
Helix 4
4
A
166 177Right-handed alpha
Helix 5
5
A
194 206Right-handed alpha
Helix 6
6
A
220 230Right-handed alpha
Helix 7
7
A
239 243Right-handed alpha
Helix 8
8
A
265 276Right-handed alpha
Helix 9
9
A
296 303Right-handed alpha
Helix 10
10
A
311 319Right-handed alpha
Helix 11
11
A
320 337Right-handed alpha
Helix 12
12
A
352 362Right-handed alpha
Helix 13
13
B
53 57Right-handed alpha
Helix 14
14
B
83 92Right-handed alpha
Helix 15
15
B
157 162Right-handed alpha
Helix 16
16
B
166 178Right-handed alpha
Helix 17
17
B
194 207Right-handed alpha
Helix 18
18
B
220 231Right-handed alpha
Helix 19
19
B
239 243Right-handed alpha
Helix 20
20
B
265 276Right-handed alpha
Helix 21
21
B
296 303Right-handed alpha
Helix 22
22
B
311 318Right-handed alpha
Helix 23
23
B
320 337Right-handed alpha
Helix 24
24
B
352 361Right-handed alpha
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There are 9 sheets in PDB entry 2VCY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
102 103anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
72 81anti-parallel
Strand 3
A
109 115anti-parallel
Strand 4
A
127 130anti-parallel
Strand 5
A
149 152anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
72 81anti-parallel
Strand 3
A
368 372anti-parallel
Strand 4
A
345 349parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
210 215parallel
Strand 3
A
186 189parallel
Strand 4
A
259 262parallel
Strand 5
A
281 284parallel
Strand 6
A
306 309parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
B
293 295anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
43 48anti-parallel
Strand 3
B
102 103anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 145first strand
Strand 2
B
72 81anti-parallel
Strand 3
B
109 115anti-parallel
Strand 4
B
127 130anti-parallel
Strand 5
B
149 151anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 145first strand
Strand 2
B
72 81anti-parallel
Strand 3
B
368 372anti-parallel
Strand 4
B
345 349parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 238first strand
Strand 2
B
210 215parallel
Strand 3
B
186 190parallel
Strand 4
B
259 262parallel
Strand 5
B
281 284parallel
Strand 6
B
306 309parallel
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