Analysis of interatomic Contacts of Structural Units in PDB entry:
2VD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VD2 entry

There is 1 chain in PDB entry 2VD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0THR 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 2VD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 26Right-handed alpha
Helix 2
2
A
30 34Right-handed 310
Helix 3
3
A
44 46Right-handed 310
Helix 4
4
A
56 65Right-handed alpha
Helix 5
5
A
74 79Right-handed alpha
Helix 6
6
A
118 130Right-handed alpha
Helix 7
7
A
143 148Right-handed alpha
Helix 8
8
A
185 211Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2VD2. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
5 10parallel
Strand 4
A
69 71parallel
Strand 5
A
181 184anti-parallel
Strand 6
A
85 89anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
113 116parallel
Strand 3
A
153 158parallel
Strand 4
A
96 101anti-parallel
Strand 5
A
170 177anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il