Analysis of interatomic Contacts of Structural Units in PDB entry:
2VD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VD3 entry

There are 2 chains in PDB entry 2VD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1PRO 287
B
 ALA -1PRO 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2VD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 24Right-handed alpha
Helix 2
2
A
54 61Right-handed alpha
Helix 3
3
A
71 78Right-handed alpha
Helix 4
4
A
106 110Right-handed 310
Helix 5
5
A
120 131Right-handed alpha
Helix 6
6
A
143 147Right-handed 310
Helix 7
7
A
163 169Right-handed alpha
Helix 8
8
A
187 194Right-handed alpha
Helix 9
9
A
194 211Right-handed alpha
Helix 10
10
A
225 233Right-handed alpha
Helix 11
11
A
261 271Right-handed alpha
Helix 12
12
B
13 24Right-handed alpha
Helix 13
13
B
54 61Right-handed alpha
Helix 14
14
B
71 78Right-handed alpha
Helix 15
15
B
106 110Right-handed 310
Helix 16
16
B
120 132Right-handed alpha
Helix 17
17
B
143 145Right-handed 310
Helix 18
18
B
146 151Right-handed alpha
Helix 19
19
B
163 169Right-handed alpha
Helix 20
20
B
187 194Right-handed alpha
Helix 21
21
B
194 210Right-handed alpha
Helix 22
22
B
225 233Right-handed alpha
Helix 23
23
B
259 272Right-handed alpha
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There are 6 sheets in PDB entry 2VD3. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
45 50anti-parallel
Strand 4
A
3 8parallel
Strand 5
A
66 70parallel
Strand 6
A
182 186anti-parallel
Strand 7
A
82 86anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
115 118parallel
Strand 3
A
155 160parallel
Strand 4
A
92 99anti-parallel
Strand 5
A
171 180anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
250 258anti-parallel
Strand 3
A
214 222anti-parallel
Strand 4
A
275 281anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
37 40anti-parallel
Strand 3
B
45 50anti-parallel
Strand 4
B
3 8parallel
Strand 5
B
66 70parallel
Strand 6
B
182 186anti-parallel
Strand 7
B
82 86anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 139first strand
Strand 2
B
115 118parallel
Strand 3
B
155 160parallel
Strand 4
B
92 99anti-parallel
Strand 5
B
171 180anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
250 258anti-parallel
Strand 3
B
214 222anti-parallel
Strand 4
B
275 281anti-parallel
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