Analysis of interatomic Contacts of Structural Units in PDB entry:
2VD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VD5 entry

There are 2 chains in PDB entry 2VD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 11PRO 416
B
 GLN 11PRO 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 2VD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed alpha
Helix 2
2
A
21 38Right-handed alpha
Helix 3
3
A
39 43Right-handed 310
Helix 4
4
A
44 65Right-handed alpha
Helix 5
5
A
67 69Right-handed 310
Helix 6
6
A
104 111Right-handed alpha
Helix 7
7
A
112 114Right-handed 310
Helix 8
8
A
115 126Right-handed alpha
Helix 9
9
A
155 164Right-handed alpha
Helix 10
10
A
168 189Right-handed alpha
Helix 11
11
A
197 199Right-handed 310
Helix 12
12
A
234 238Right-handed 310
Helix 13
13
A
239 248Right-handed alpha
Helix 14
14
A
257 274Right-handed alpha
Helix 15
15
A
282 292Right-handed alpha
Helix 16
16
A
292 297Right-handed alpha
Helix 17
17
A
307 316Right-handed alpha
Helix 18
18
A
320 324Right-handed 310
Helix 19
19
A
329 335Right-handed alpha
Helix 20
20
A
336 340Right-handed 310
Helix 21
21
A
397 401Right-handed 310
Helix 22
22
A
411 415Right-handed 310
Helix 23
23
B
21 39Right-handed alpha
Helix 24
24
B
40 43Right-handed 310
Helix 25
25
B
44 65Right-handed alpha
Helix 26
26
B
67 69Right-handed 310
Helix 27
27
B
104 111Right-handed alpha
Helix 28
28
B
112 114Right-handed 310
Helix 29
29
B
115 126Right-handed alpha
Helix 30
30
B
155 164Right-handed alpha
Helix 31
31
B
168 190Right-handed alpha
Helix 32
32
B
197 199Right-handed 310
Helix 33
33
B
234 238Right-handed 310
Helix 34
34
B
239 247Right-handed alpha
Helix 35
35
B
257 274Right-handed alpha
Helix 36
36
B
282 292Right-handed alpha
Helix 37
37
B
292 297Right-handed alpha
Helix 38
38
B
307 316Right-handed alpha
Helix 39
39
B
320 324Right-handed 310
Helix 40
40
B
328 334Right-handed 310
Helix 41
41
B
336 340Right-handed 310
Helix 42
42
B
397 401Right-handed 310
Helix 43
43
B
411 415Right-handed 310
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There are 7 sheets in PDB entry 2VD5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 79first strand
Strand 2
A
84 90anti-parallel
Strand 3
A
96 103anti-parallel
Strand 4
A
143 148anti-parallel
Strand 5
A
134 139anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
218 219anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
209 211anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
254 255anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 79first strand
Strand 2
B
84 90anti-parallel
Strand 3
B
96 103anti-parallel
Strand 4
B
143 148anti-parallel
Strand 5
B
134 139anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
218 219anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 203first strand
Strand 2
B
209 211anti-parallel
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