Analysis of interatomic Contacts of Structural Units in PDB entry:
2VD6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VD6 entry

There are 4 chains in PDB entry 2VD6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 5	SER 474
B	GLY 5	MET 476
C	GLY 5	TYR 472
D	GLY 5	MET 476

There are100 helices in PDB entry 2VD6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	20	Right-handed alpha
Helix 2	2	A	23	30	Right-handed alpha
Helix 3	3	A	31	53	Right-handed alpha
Helix 4	4	A	58	68	Right-handed alpha
Helix 5	5	A	73	85	Right-handed alpha
Helix 6	6	A	86	99	Right-handed alpha
Helix 7	7	A	102	106	Right-handed 310
Helix 8	8	A	112	149	Right-handed alpha
Helix 9	9	A	168	193	Right-handed alpha
Helix 10	10	A	205	212	Right-handed alpha
Helix 11	11	A	215	230	Right-handed alpha
Helix 12	12	A	245	275	Right-handed alpha
Helix 13	13	A	298	314	Right-handed alpha
Helix 14	14	A	315	324	Right-handed alpha
Helix 15	15	A	330	332	Right-handed 310
Helix 16	16	A	333	361	Right-handed alpha
Helix 17	17	A	365	392	Right-handed alpha
Helix 18	18	A	395	418	Right-handed alpha
Helix 19	19	A	422	429	Right-handed alpha
Helix 20	20	A	430	438	Right-handed 310
Helix 21	21	A	439	444	Right-handed alpha
Helix 22	22	A	445	450	Right-handed 310
Helix 23	23	A	452	464	Right-handed alpha
Helix 24	24	A	465	470	Right-handed alpha
Helix 25	25	A	471	473	Right-handed 310
Helix 26	26	B	15	20	Right-handed alpha
Helix 27	27	B	23	30	Right-handed alpha
Helix 28	28	B	31	53	Right-handed alpha
Helix 29	29	B	58	68	Right-handed alpha
Helix 30	30	B	73	85	Right-handed alpha
Helix 31	31	B	86	99	Right-handed alpha
Helix 32	32	B	102	106	Right-handed 310
Helix 33	33	B	112	149	Right-handed alpha
Helix 34	34	B	168	193	Right-handed alpha
Helix 35	35	B	205	212	Right-handed alpha
Helix 36	36	B	215	230	Right-handed alpha
Helix 37	37	B	245	275	Right-handed alpha
Helix 38	38	B	298	315	Right-handed alpha
Helix 39	39	B	315	324	Right-handed alpha
Helix 40	40	B	330	332	Right-handed 310
Helix 41	41	B	333	360	Right-handed alpha
Helix 42	42	B	365	392	Right-handed alpha
Helix 43	43	B	395	417	Right-handed alpha
Helix 44	44	B	422	430	Right-handed alpha
Helix 45	45	B	431	438	Right-handed 310
Helix 46	46	B	439	444	Right-handed alpha
Helix 47	47	B	445	450	Right-handed 310
Helix 48	48	B	452	464	Right-handed alpha
Helix 49	49	B	464	470	Right-handed alpha
Helix 50	50	B	471	476	Right-handed 310
Helix 51	51	C	15	20	Right-handed alpha
Helix 52	52	C	23	30	Right-handed alpha
Helix 53	53	C	31	53	Right-handed alpha
Helix 54	54	C	58	67	Right-handed alpha
Helix 55	55	C	73	85	Right-handed alpha
Helix 56	56	C	86	99	Right-handed alpha
Helix 57	57	C	101	106	Right-handed 310
Helix 58	58	C	112	149	Right-handed alpha
Helix 59	59	C	168	193	Right-handed alpha
Helix 60	60	C	205	212	Right-handed alpha
Helix 61	61	C	215	230	Right-handed alpha
Helix 62	62	C	245	275	Right-handed alpha
Helix 63	63	C	298	314	Right-handed alpha
Helix 64	64	C	315	324	Right-handed alpha
Helix 65	65	C	330	332	Right-handed 310
Helix 66	66	C	333	361	Right-handed alpha
Helix 67	67	C	365	392	Right-handed alpha
Helix 68	68	C	395	418	Right-handed alpha
Helix 69	69	C	422	430	Right-handed alpha
Helix 70	70	C	431	434	Right-handed 310
Helix 71	71	C	436	438	Right-handed 310
Helix 72	72	C	439	444	Right-handed alpha
Helix 73	73	C	445	450	Right-handed 310
Helix 74	74	C	452	464	Right-handed alpha
Helix 75	75	C	464	470	Right-handed alpha
Helix 76	76	D	15	20	Right-handed alpha
Helix 77	77	D	23	30	Right-handed alpha
Helix 78	78	D	31	53	Right-handed alpha
Helix 79	79	D	58	68	Right-handed alpha
Helix 80	80	D	73	85	Right-handed alpha
Helix 81	81	D	86	99	Right-handed alpha
Helix 82	82	D	102	106	Right-handed 310
Helix 83	83	D	112	149	Right-handed alpha
Helix 84	84	D	168	193	Right-handed alpha
Helix 85	85	D	205	212	Right-handed alpha
Helix 86	86	D	215	230	Right-handed alpha
Helix 87	87	D	245	275	Right-handed alpha
Helix 88	88	D	298	314	Right-handed alpha
Helix 89	89	D	315	324	Right-handed alpha
Helix 90	90	D	330	332	Right-handed 310
Helix 91	91	D	333	360	Right-handed alpha
Helix 92	92	D	365	393	Right-handed alpha
Helix 93	93	D	395	416	Right-handed alpha
Helix 94	94	D	422	429	Right-handed alpha
Helix 95	95	D	430	438	Right-handed 310
Helix 96	96	D	439	444	Right-handed alpha
Helix 97	97	D	445	450	Right-handed 310
Helix 98	98	D	452	464	Right-handed alpha
Helix 99	99	D	464	470	Right-handed alpha
Helix 100	100	D	471	476	Right-handed 310

There are 8 sheets in PDB entry 2VD6. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	158	first strand
Strand 2	A	161	167	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	279	first strand
Strand 2	A	363	364	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	158	first strand
Strand 2	B	161	167	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	363	364	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	158	first strand
Strand 2	C	161	167	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	279	first strand
Strand 2	C	363	364	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	158	first strand
Strand 2	D	161	167	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	279	first strand
Strand 2	D	363	364	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VD6

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VD6