Analysis of interatomic Contacts of Structural Units in PDB entry:
2VDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VDA entry

There are 2 chains in PDB entry 2VDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9GLU 836
B
 MET 1ALA 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2VDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 36Right-handed alpha
Helix 2
2
A
39 57Right-handed alpha
Helix 3
3
A
59 79Right-handed alpha
Helix 4
4
A
84 94Right-handed alpha
Helix 5
5
A
108 121Right-handed alpha
Helix 6
6
A
132 143Right-handed alpha
Helix 7
7
A
143 148Right-handed alpha
Helix 8
8
A
162 171Right-handed alpha
Helix 9
9
A
179 191Right-handed alpha
Helix 10
10
A
194 198Right-handed 310
Helix 11
11
A
210 215Right-handed alpha
Helix 12
12
A
216 221Right-handed 310
Helix 13
13
A
233 235Right-handed 310
Helix 14
14
A
236 241Right-handed alpha
Helix 15
15
A
242 246Right-handed 310
Helix 16
16
A
281 285Right-handed 310
Helix 17
17
A
300 302Right-handed 310
Helix 18
18
A
303 315Right-handed alpha
Helix 19
19
A
352 361Right-handed alpha
Helix 20
20
A
377 382Right-handed alpha
Helix 21
21
A
395 399Right-handed 310
Helix 22
22
A
400 405Right-handed alpha
Helix 23
23
A
430 449Right-handed alpha
Helix 24
24
A
458 473Right-handed alpha
Helix 25
25
A
483 492Right-handed alpha
Helix 26
26
A
518 524Right-handed alpha
Helix 27
27
A
530 552Right-handed alpha
Helix 28
28
A
564 573Right-handed alpha
Helix 29
29
A
592 597Right-handed 310
Helix 30
30
A
600 605Right-handed alpha
Helix 31
31
A
606 610Right-handed 310
Helix 32
32
A
620 669Right-handed alpha
Helix 33
33
A
672 690Right-handed alpha
Helix 34
34
A
697 701Right-handed 310
Helix 35
35
A
702 714Right-handed alpha
Helix 36
36
A
719 727Right-handed alpha
Helix 37
37
A
728 731Right-handed 310
Helix 38
38
A
732 755Right-handed alpha
Helix 39
39
A
755 789Right-handed alpha
Helix 40
40
A
790 792Right-handed 310
Helix 41
41
A
798 829Right-handed alpha
Helix 42
42
B
12 21Right-handed alpha
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There are 3 sheets in PDB entry 2VDA. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
174 178parallel
Strand 3
A
126 130parallel
Strand 4
A
205 208parallel
Strand 5
A
386 391parallel
Strand 6
A
98 101parallel
Strand 7
A
408 411parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
332 336anti-parallel
Strand 3
A
343 344anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 428first strand
Strand 2
A
581 589parallel
Strand 3
A
554 558parallel
Strand 4
A
452 456parallel
Strand 5
A
500 504parallel
Strand 6
A
477 479parallel
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