Analysis of interatomic Contacts of Structural Units in PDB entry:
2VDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VDF entry

There is 1 chain in PDB entry 2VDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7PHE 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2VDF. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
68 73Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2VDF.

There are 28 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 23first strand
Strand 2
A
26 43anti-parallel
Strand 3
A
48 65anti-parallel
Strand 4
A
85 103anti-parallel
Strand 5
A
106 122anti-parallel
Strand 6
A
131 150anti-parallel
Strand 7
A
153 171anti-parallel
Strand 8
A
182 185anti-parallel
Strand 9
A
26 43first strand
Strand 10
A
9 23anti-parallel
Strand 11
A
48 65first strand
Strand 12
A
26 43anti-parallel
Strand 13
A
85 103first strand
Strand 14
A
48 65anti-parallel
Strand 15
A
106 122first strand
Strand 16
A
85 103anti-parallel
Strand 17
A
131 150first strand
Strand 18
A
106 122anti-parallel
Strand 19
A
153 171first strand
Strand 20
A
131 150anti-parallel
Strand 21
A
182 185first strand
Strand 22
A
153 171anti-parallel
Strand 23
A
188 200anti-parallel
Strand 24
A
153 171parallel
Strand 25
A
206 218first strand
Strand 26
A
188 200anti-parallel
Strand 27
A
240 253first strand
Strand 28
A
9 23anti-parallel
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