Analysis of interatomic Contacts of Structural Units in PDB entry:
2VDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VDJ entry

There is 1 chain in PDB entry 2VDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 17GLU 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2VDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 59Right-handed alpha
Helix 2
2
A
91 96Right-handed alpha
Helix 3
3
A
114 118Right-handed 310
Helix 4
4
A
120 134Right-handed alpha
Helix 5
5
A
142 154Right-handed alpha
Helix 6
6
A
177 181Right-handed 310
Helix 7
7
A
198 204Right-handed alpha
Helix 8
8
A
241 254Right-handed alpha
Helix 9
9
A
265 268Right-handed 310
Helix 10
10
A
277 292Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2VDJ.

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
65 70parallel
Strand 3
A
36 41parallel
Strand 4
A
100 105parallel
Strand 5
A
135 141parallel
Strand 6
A
229 232parallel
Strand 7
A
218 224anti-parallel
Strand 8
A
208 214anti-parallel
Strand 9
A
158 172anti-parallel
Strand 10
A
186 196anti-parallel
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