Analysis of interatomic Contacts of Structural Units in PDB entry:
2VDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VDT entry

There is 1 chain in PDB entry 2VDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 34ASN 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2VDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 53Right-handed 310
Helix 2
2
A
56 60Right-handed 310
Helix 3
3
A
60 63Right-handed 310
Helix 4
4
A
132 136Right-handed 310
Helix 5
5
A
146 151Right-handed alpha
Helix 6
6
A
153 158Right-handed 310
Helix 7
7
A
227 233Right-handed alpha
Helix 8
8
A
274 278Right-handed 310
Helix 9
9
A
280 283Right-handed 310
Helix 10
10
A
286 299Right-handed alpha
Helix 11
11
A
303 308Right-handed alpha
Helix 12
12
A
360 364Right-handed 310
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There are 9 sheets in PDB entry 2VDT. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
125 127anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 169first strand
Strand 2
A
175 183anti-parallel
Strand 3
A
189 196anti-parallel
Strand 4
A
216 218anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
206 207anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 253first strand
Strand 2
A
256 263anti-parallel
Strand 3
A
312 318anti-parallel
Strand 4
A
332 333anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 253first strand
Strand 2
A
256 263anti-parallel
Strand 3
A
312 318anti-parallel
Strand 4
A
324 327anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
352 359anti-parallel
Strand 3
A
375 381anti-parallel
Strand 4
A
396 399anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
352 359anti-parallel
Strand 3
A
375 381anti-parallel
Strand 4
A
389 390anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 416first strand
Strand 2
A
423 430anti-parallel
Strand 3
A
448 452anti-parallel
Strand 4
A
455 458anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 416first strand
Strand 2
A
423 430anti-parallel
Strand 3
A
442 443anti-parallel
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