Analysis of interatomic Contacts of Structural Units in PDB entry:
2VDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VDV entry

There are 2 chains in PDB entry 2VDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ASN 60LEU 286
F
 ASN 60LEU 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2VDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
62 66Right-handed 310
Helix 2
2
E
77 81Right-handed 310
Helix 3
3
E
82 85Right-handed 310
Helix 4
4
E
107 117Right-handed alpha
Helix 5
5
E
128 145Right-handed alpha
Helix 6
6
E
165 169Right-handed 310
Helix 7
7
E
198 208Right-handed alpha
Helix 8
8
E
221 235Right-handed alpha
Helix 9
9
E
242 248Right-handed alpha
Helix 10
10
E
249 258Right-handed alpha
Helix 11
11
E
259 268Right-handed alpha
Helix 12
12
F
62 66Right-handed 310
Helix 13
13
F
77 81Right-handed 310
Helix 14
14
F
82 85Right-handed 310
Helix 15
15
F
107 117Right-handed alpha
Helix 16
16
F
128 145Right-handed alpha
Helix 17
17
F
165 169Right-handed 310
Helix 18
18
F
198 208Right-handed alpha
Helix 19
19
F
221 235Right-handed alpha
Helix 20
20
F
242 248Right-handed alpha
Helix 21
21
F
249 258Right-handed alpha
Helix 22
22
F
259 268Right-handed alpha
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There are 2 sheets in PDB entry 2VDV. Click on sheet of interest to get list of strands forming it: EA, FA,

There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
155 159first strand
Strand 2
E
121 126parallel
Strand 3
E
97 102parallel
Strand 4
E
175 181parallel
Strand 5
E
209 219parallel
Strand 6
E
273 279anti-parallel
Strand 7
E
238 240anti-parallel
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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
155 159first strand
Strand 2
F
121 126parallel
Strand 3
F
97 102parallel
Strand 4
F
175 181parallel
Strand 5
F
209 219parallel
Strand 6
F
273 279anti-parallel
Strand 7
F
238 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il