Analysis of interatomic Contacts of Structural Units in PDB entry:
2VDW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VDW entry

There are 5 chains in PDB entry 2VDW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 545	ARG 844
B	MET 1	LEU 287
C	ASP 545	ARG 844
D	MET 1	LEU 287
E	ASP 545	LEU 615

There are105 helices in PDB entry 2VDW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	562	581	Right-handed alpha
Helix 2	2	A	604	611	Right-handed alpha
Helix 3	3	A	622	637	Right-handed alpha
Helix 4	4	A	658	665	Right-handed alpha
Helix 5	5	A	680	684	Right-handed 310
Helix 6	6	A	689	700	Right-handed alpha
Helix 7	7	A	713	718	Right-handed alpha
Helix 8	8	A	767	778	Right-handed alpha
Helix 9	9	A	788	794	Right-handed alpha
Helix 10	10	A	795	801	Right-handed alpha
Helix 11	11	A	802	806	Right-handed 310
Helix 12	12	A	808	824	Right-handed alpha
Helix 13	13	A	828	834	Right-handed alpha
Helix 14	14	B	2	11	Right-handed alpha
Helix 15	15	B	42	47	Right-handed alpha
Helix 16	16	B	47	55	Right-handed alpha
Helix 17	17	B	57	66	Right-handed alpha
Helix 18	18	B	67	69	Right-handed 310
Helix 19	19	B	73	82	Right-handed alpha
Helix 20	20	B	132	136	Right-handed 310
Helix 21	21	B	137	140	Right-handed 310
Helix 22	22	B	141	147	Right-handed alpha
Helix 23	23	B	162	175	Right-handed alpha
Helix 24	24	B	202	218	Right-handed alpha
Helix 25	25	B	223	227	Right-handed 310
Helix 26	26	B	238	269	Right-handed alpha
Helix 27	27	B	276	284	Right-handed alpha
Helix 28	28	C	562	581	Right-handed alpha
Helix 29	29	C	604	611	Right-handed alpha
Helix 30	30	C	622	637	Right-handed alpha
Helix 31	31	C	658	665	Right-handed alpha
Helix 32	32	C	680	684	Right-handed 310
Helix 33	33	C	689	700	Right-handed alpha
Helix 34	34	C	713	718	Right-handed alpha
Helix 35	35	C	767	778	Right-handed alpha
Helix 36	36	C	788	794	Right-handed alpha
Helix 37	37	C	795	801	Right-handed alpha
Helix 38	38	C	802	806	Right-handed 310
Helix 39	39	C	808	824	Right-handed alpha
Helix 40	40	C	828	834	Right-handed alpha
Helix 41	41	D	2	11	Right-handed alpha
Helix 42	42	D	36	40	Right-handed 310
Helix 43	43	D	42	47	Right-handed alpha
Helix 44	44	D	47	55	Right-handed alpha
Helix 45	45	D	57	66	Right-handed alpha
Helix 46	46	D	67	69	Right-handed 310
Helix 47	47	D	73	82	Right-handed alpha
Helix 48	48	D	132	136	Right-handed 310
Helix 49	49	D	137	140	Right-handed 310
Helix 50	50	D	141	147	Right-handed alpha
Helix 51	51	D	163	175	Right-handed alpha
Helix 52	52	D	202	218	Right-handed alpha
Helix 53	53	D	223	227	Right-handed 310
Helix 54	54	D	238	269	Right-handed alpha
Helix 55	55	D	276	284	Right-handed alpha
Helix 56	56	E	562	582	Right-handed alpha
Helix 57	57	E	604	611	Right-handed alpha
Helix 58	58	E	622	637	Right-handed alpha
Helix 59	59	E	658	665	Right-handed alpha
Helix 60	60	E	680	684	Right-handed 310
Helix 61	61	E	689	700	Right-handed alpha
Helix 62	62	E	713	718	Right-handed alpha
Helix 63	63	E	767	778	Right-handed alpha
Helix 64	64	E	788	794	Right-handed alpha
Helix 65	65	E	795	801	Right-handed alpha
Helix 66	66	E	802	806	Right-handed 310
Helix 67	67	E	808	822	Right-handed alpha
Helix 68	68	E	828	834	Right-handed alpha
Helix 69	69	F	2	11	Right-handed alpha
Helix 70	70	F	42	47	Right-handed alpha
Helix 71	71	F	47	54	Right-handed alpha
Helix 72	72	F	57	66	Right-handed alpha
Helix 73	73	F	73	82	Right-handed alpha
Helix 74	74	F	132	136	Right-handed 310
Helix 75	75	F	137	145	Right-handed 310
Helix 76	76	F	162	175	Right-handed alpha
Helix 77	77	F	202	218	Right-handed alpha
Helix 78	78	F	223	227	Right-handed 310
Helix 79	79	F	238	268	Right-handed alpha
Helix 80	80	F	276	287	Right-handed alpha
Helix 81	81	G	563	582	Right-handed alpha
Helix 82	82	G	604	611	Right-handed alpha
Helix 83	83	G	622	637	Right-handed alpha
Helix 84	84	G	658	665	Right-handed alpha
Helix 85	85	G	680	684	Right-handed 310
Helix 86	86	G	689	700	Right-handed alpha
Helix 87	87	G	713	718	Right-handed alpha
Helix 88	88	G	767	778	Right-handed alpha
Helix 89	89	G	788	794	Right-handed alpha
Helix 90	90	G	795	801	Right-handed alpha
Helix 91	91	G	802	806	Right-handed 310
Helix 92	92	G	808	822	Right-handed alpha
Helix 93	93	G	828	834	Right-handed alpha
Helix 94	94	H	2	11	Right-handed alpha
Helix 95	95	H	42	47	Right-handed alpha
Helix 96	96	H	47	54	Right-handed alpha
Helix 97	97	H	57	66	Right-handed alpha
Helix 98	98	H	73	82	Right-handed alpha
Helix 99	99	H	132	136	Right-handed 310
Helix 100	100	H	137	145	Right-handed 310
Helix 101	101	H	162	175	Right-handed alpha
Helix 102	102	H	202	218	Right-handed alpha
Helix 103	103	H	223	227	Right-handed 310
Helix 104	104	H	238	268	Right-handed alpha
Helix 105	105	H	276	287	Right-handed alpha

There are 17 sheets in PDB entry 2VDW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA, CB, A, DB, EA, EB, FA, FB, GA, GB, HA, HB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	651	first strand
Strand 2	A	615	620	parallel
Strand 3	A	593	596	parallel
Strand 4	A	672	678	parallel
Strand 5	A	701	712	parallel
Strand 6	A	836	843	anti-parallel
Strand 7	A	780	787	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	727	first strand
Strand 2	A	738	741	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	745	first strand
Strand 2	A	748	751	anti-parallel
Strand 3	A	761	764	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	176	183	anti-parallel
Strand 3	B	194	201	anti-parallel
Strand 4	B	152	157	anti-parallel
Strand 5	B	98	102	parallel
Strand 6	B	87	88	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	230	231	anti-parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	651	first strand
Strand 2	C	615	620	parallel
Strand 3	C	593	596	parallel
Strand 4	C	672	678	parallel
Strand 5	C	701	712	parallel
Strand 6	C	836	843	anti-parallel
Strand 7	C	780	787	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	724	727	first strand
Strand 2	C	738	745	anti-parallel
Strand 3	C	748	752	anti-parallel
Strand 4	C	761	764	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	15	first strand
Strand 2	D	176	183	anti-parallel
Strand 3	D	194	201	anti-parallel
Strand 4	D	152	157	anti-parallel
Strand 5	D	98	102	parallel
Strand 6	D	87	88	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	230	231	anti-parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	646	651	first strand
Strand 2	E	615	620	parallel
Strand 3	E	593	597	parallel
Strand 4	E	672	678	parallel
Strand 5	E	701	712	parallel
Strand 6	E	836	843	anti-parallel
Strand 7	E	780	787	anti-parallel

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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	724	727	first strand
Strand 2	E	738	745	anti-parallel
Strand 3	E	748	752	anti-parallel
Strand 4	E	761	764	anti-parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	16	first strand
Strand 2	F	176	183	anti-parallel
Strand 3	F	194	201	anti-parallel
Strand 4	F	152	157	anti-parallel
Strand 5	F	98	102	parallel
Strand 6	F	87	88	parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	29	first strand
Strand 2	F	230	233	anti-parallel

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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	646	651	first strand
Strand 2	G	615	620	parallel
Strand 3	G	593	597	parallel
Strand 4	G	672	678	parallel
Strand 5	G	701	712	parallel
Strand 6	G	836	843	anti-parallel
Strand 7	G	780	787	anti-parallel

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There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	724	725	first strand
Strand 2	G	740	745	anti-parallel
Strand 3	G	748	752	anti-parallel
Strand 4	G	761	764	anti-parallel

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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	16	first strand
Strand 2	H	176	183	anti-parallel
Strand 3	H	194	201	anti-parallel
Strand 4	H	152	157	anti-parallel
Strand 5	H	98	102	parallel
Strand 6	H	87	88	parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	29	first strand
Strand 2	H	230	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VDW

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VDW