Analysis of interatomic Contacts of Structural Units in PDB entry:
2VDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VDX entry

There are 2 chains in PDB entry 2VDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 16VAL 383
B
 GLY 16VAL 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2VDX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 36Right-handed alpha
Helix 2
2
A
44 57Right-handed alpha
Helix 3
3
A
60 71Right-handed alpha
Helix 4
4
A
79 96Right-handed alpha
Helix 5
5
A
118 130Right-handed alpha
Helix 6
6
A
140 156Right-handed alpha
Helix 7
7
A
190 194Right-handed 310
Helix 8
8
A
250 257Right-handed alpha
Helix 9
9
A
259 270Right-handed alpha
Helix 10
10
A
290 297Right-handed alpha
Helix 11
11
A
300 304Right-handed 310
Helix 12
12
B
16 36Right-handed alpha
Helix 13
13
B
44 57Right-handed alpha
Helix 14
14
B
60 71Right-handed alpha
Helix 15
15
B
79 94Right-handed alpha
Helix 16
16
B
118 129Right-handed alpha
Helix 17
17
B
140 156Right-handed alpha
Helix 18
18
B
190 194Right-handed 310
Helix 19
19
B
250 258Right-handed alpha
Helix 20
20
B
259 270Right-handed alpha
Helix 21
21
B
290 297Right-handed alpha
Helix 22
22
B
300 304Right-handed 310
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There are 6 sheets in PDB entry 2VDX. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
373 379anti-parallel
Strand 3
A
361 367anti-parallel
Strand 4
A
239 246anti-parallel
Strand 5
A
228 234anti-parallel
Strand 6
A
205 222anti-parallel
Strand 7
A
195 202anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
373 379anti-parallel
Strand 3
A
361 367anti-parallel
Strand 4
A
239 246anti-parallel
Strand 5
A
228 234anti-parallel
Strand 6
A
205 222anti-parallel
Strand 7
A
271 280anti-parallel
Strand 8
A
353 356parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
102 112parallel
Strand 3
A
173 184anti-parallel
Strand 4
A
335 348anti-parallel
Strand 5
A
318 331anti-parallel
Strand 6
A
283 289anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
373 379anti-parallel
Strand 3
B
361 367anti-parallel
Strand 4
B
239 246anti-parallel
Strand 5
B
228 234anti-parallel
Strand 6
B
206 222anti-parallel
Strand 7
B
195 200anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
373 379anti-parallel
Strand 3
B
361 367anti-parallel
Strand 4
B
239 246anti-parallel
Strand 5
B
228 234anti-parallel
Strand 6
B
206 222anti-parallel
Strand 7
B
271 280anti-parallel
Strand 8
B
353 356parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 136first strand
Strand 2
B
102 112parallel
Strand 3
B
173 184anti-parallel
Strand 4
B
335 348anti-parallel
Strand 5
B
318 331anti-parallel
Strand 6
B
282 289anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il