Analysis of interatomic Contacts of Structural Units in PDB entry:
2VE4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VE4 entry

There are 2 chains in PDB entry 2VE4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 11HIS 441
B
 LEU 11SER 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2VE4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 32Right-handed alpha
Helix 2
2
A
34 44Right-handed alpha
Helix 3
3
A
61 69Right-handed alpha
Helix 4
4
A
71 75Right-handed alpha
Helix 5
5
A
81 89Right-handed alpha
Helix 6
6
A
92 96Right-handed 310
Helix 7
7
A
97 109Right-handed alpha
Helix 8
8
A
110 112Right-handed 310
Helix 9
9
A
113 119Right-handed alpha
Helix 10
10
A
120 138Right-handed alpha
Helix 11
11
A
143 161Right-handed alpha
Helix 12
12
A
161 166Right-handed alpha
Helix 13
13
A
169 180Right-handed alpha
Helix 14
14
A
191 216Right-handed alpha
Helix 15
15
A
223 231Right-handed alpha
Helix 16
16
A
240 270Right-handed alpha
Helix 17
17
A
273 286Right-handed alpha
Helix 18
18
A
294 299Right-handed alpha
Helix 19
19
A
301 315Right-handed alpha
Helix 20
20
A
345 350Right-handed alpha
Helix 21
21
A
363 368Right-handed 310
Helix 22
22
A
386 390Right-handed 310
Helix 23
23
A
393 412Right-handed alpha
Helix 24
24
B
25 32Right-handed alpha
Helix 25
25
B
39 44Right-handed alpha
Helix 26
26
B
61 69Right-handed alpha
Helix 27
27
B
71 75Right-handed alpha
Helix 28
28
B
81 89Right-handed alpha
Helix 29
29
B
97 109Right-handed alpha
Helix 30
30
B
110 112Right-handed 310
Helix 31
31
B
113 137Right-handed alpha
Helix 32
32
B
143 161Right-handed alpha
Helix 33
33
B
163 167Right-handed 310
Helix 34
34
B
169 180Right-handed alpha
Helix 35
35
B
191 215Right-handed alpha
Helix 36
36
B
223 230Right-handed alpha
Helix 37
37
B
240 273Right-handed alpha
Helix 38
38
B
273 287Right-handed alpha
Helix 39
39
B
294 299Right-handed alpha
Helix 40
40
B
301 315Right-handed alpha
Helix 41
41
B
346 350Right-handed alpha
Helix 42
42
B
363 368Right-handed 310
Helix 43
43
B
386 390Right-handed 310
Helix 44
44
B
393 412Right-handed alpha
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There are 8 sheets in PDB entry 2VE4. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
54 58anti-parallel
Strand 3
A
341 344parallel
Strand 4
A
321 325anti-parallel
Strand 5
A
76 77anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
437 440anti-parallel
Strand 3
A
414 416anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
334 336anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
431 432anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 51first strand
Strand 2
B
54 60anti-parallel
Strand 3
B
341 345parallel
Strand 4
B
320 325anti-parallel
Strand 5
B
76 78anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
437 441anti-parallel
Strand 3
B
413 416anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 331first strand
Strand 2
B
334 336anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 426first strand
Strand 2
B
430 432anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il