Analysis of interatomic Contacts of Structural Units in PDB entry:
2VEA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VEA entry

There is 1 chain in PDB entry 2VEA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4HIS 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2VEA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 18Right-handed alpha
Helix 2
2
A
48 53Right-handed alpha
Helix 3
3
A
85 90Right-handed alpha
Helix 4
4
A
137 146Right-handed alpha
Helix 5
5
A
152 169Right-handed alpha
Helix 6
6
A
204 208Right-handed 310
Helix 7
7
A
209 219Right-handed alpha
Helix 8
8
A
257 268Right-handed alpha
Helix 9
9
A
298 345Right-handed alpha
Helix 10
10
A
347 354Right-handed alpha
Helix 11
11
A
355 362Right-handed alpha
Helix 12
12
A
384 398Right-handed alpha
Helix 13
13
A
408 412Right-handed 310
Helix 14
14
A
413 420Right-handed 310
Helix 15
15
A
453 456Right-handed 310
Helix 16
16
A
490 515Right-handed alpha
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There are 6 sheets in PDB entry 2VEA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
232 235anti-parallel
Strand 3
A
41 46anti-parallel
Strand 4
A
31 36anti-parallel
Strand 5
A
118 124anti-parallel
Strand 6
A
103 112anti-parallel
Strand 7
A
92 97anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
184 191anti-parallel
Strand 3
A
172 178anti-parallel
Strand 4
A
282 291anti-parallel
Strand 5
A
271 279anti-parallel
Strand 6
A
221 224anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
244 245anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 380first strand
Strand 2
A
367 372anti-parallel
Strand 3
A
436 441anti-parallel
Strand 4
A
425 430anti-parallel
Strand 5
A
404 406anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 451first strand
Strand 2
A
477 482anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 461first strand
Strand 2
A
468 471anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il