Analysis of interatomic Contacts of Structural Units in PDB entry:
2VEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VEF entry

There are 2 chains in PDB entry 2VEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 7ASP 303
B
 ASN 6ALA 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2VEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 45Right-handed alpha
Helix 2
2
A
62 84Right-handed alpha
Helix 3
3
A
94 104Right-handed alpha
Helix 4
4
A
120 129Right-handed alpha
Helix 5
5
A
137 142Right-handed alpha
Helix 6
6
A
165 171Right-handed alpha
Helix 7
7
A
172 192Right-handed alpha
Helix 8
8
A
194 196Right-handed 310
Helix 9
9
A
209 219Right-handed alpha
Helix 10
10
A
219 225Right-handed alpha
Helix 11
11
A
237 247Right-handed alpha
Helix 12
12
A
255 276Right-handed alpha
Helix 13
13
A
285 301Right-handed alpha
Helix 14
14
B
32 46Right-handed alpha
Helix 15
15
B
64 84Right-handed alpha
Helix 16
16
B
94 104Right-handed alpha
Helix 17
17
B
120 129Right-handed alpha
Helix 18
18
B
137 142Right-handed alpha
Helix 19
19
B
145 149Right-handed 310
Helix 20
20
B
161 169Right-handed alpha
Helix 21
21
B
172 192Right-handed alpha
Helix 22
22
B
194 196Right-handed 310
Helix 23
23
B
209 219Right-handed alpha
Helix 24
24
B
219 225Right-handed alpha
Helix 25
25
B
237 247Right-handed alpha
Helix 26
26
B
255 276Right-handed alpha
Helix 27
27
B
285 301Right-handed alpha
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There are 2 sheets in PDB entry 2VEF. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
131 135parallel
Strand 3
A
108 111parallel
Strand 4
A
87 91parallel
Strand 5
A
49 53parallel
Strand 6
A
11 17parallel
Strand 7
A
280 283parallel
Strand 8
A
231 233parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
131 135parallel
Strand 3
B
108 111parallel
Strand 4
B
87 91parallel
Strand 5
B
49 53parallel
Strand 6
B
11 17parallel
Strand 7
B
280 283parallel
Strand 8
B
231 233parallel
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