Analysis of interatomic Contacts of Structural Units in PDB entry:
2VEI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VEI entry

There are 3 chains in PDB entry 2VEI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 250
B
 SER 2GLN 250
C
 SER 2GLN 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 2VEI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
44 46Right-handed 310
Helix 3
3
A
47 55Right-handed alpha
Helix 4
4
A
69 86Right-handed alpha
Helix 5
5
A
95 101Right-handed alpha
Helix 6
6
A
105 119Right-handed alpha
Helix 7
7
A
130 136Right-handed alpha
Helix 8
8
A
138 153Right-handed alpha
Helix 9
9
A
155 160Right-handed 310
Helix 10
10
A
168 173Right-handed alpha
Helix 11
11
A
179 198Right-handed alpha
Helix 12
12
A
199 206Right-handed alpha
Helix 13
13
A
218 224Right-handed alpha
Helix 14
14
A
241 248Right-handed alpha
Helix 15
15
B
17 30Right-handed alpha
Helix 16
16
B
44 46Right-handed 310
Helix 17
17
B
47 55Right-handed alpha
Helix 18
18
B
69 86Right-handed alpha
Helix 19
19
B
95 102Right-handed alpha
Helix 20
20
B
105 119Right-handed alpha
Helix 21
21
B
130 136Right-handed alpha
Helix 22
22
B
138 153Right-handed alpha
Helix 23
23
B
155 160Right-handed 310
Helix 24
24
B
168 172Right-handed 310
Helix 25
25
B
179 198Right-handed alpha
Helix 26
26
B
199 206Right-handed alpha
Helix 27
27
B
215 224Right-handed alpha
Helix 28
28
B
241 248Right-handed alpha
Helix 29
29
C
17 30Right-handed alpha
Helix 30
30
C
44 46Right-handed 310
Helix 31
31
C
47 55Right-handed alpha
Helix 32
32
C
69 71Right-handed 310
Helix 33
33
C
72 87Right-handed alpha
Helix 34
34
C
95 102Right-handed alpha
Helix 35
35
C
105 119Right-handed alpha
Helix 36
36
C
130 136Right-handed alpha
Helix 37
37
C
138 153Right-handed alpha
Helix 38
38
C
155 160Right-handed 310
Helix 39
39
C
168 172Right-handed 310
Helix 40
40
C
179 198Right-handed alpha
Helix 41
41
C
199 206Right-handed alpha
Helix 42
42
C
215 224Right-handed alpha
Helix 43
43
C
241 248Right-handed alpha
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There are 3 sheets in PDB entry 2VEI. Click on sheet of interest to get list of strands forming it: AA, BA, CA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
38 43parallel
Strand 3
A
60 64parallel
Strand 4
A
90 93parallel
Strand 5
A
122 127parallel
Strand 6
A
162 166parallel
Strand 7
A
208 210parallel
Strand 8
A
230 234parallel
Strand 9
A
7 11parallel
Strand 10
A
7 11first strand
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
38 43parallel
Strand 3
B
60 64parallel
Strand 4
B
90 93parallel
Strand 5
B
122 127parallel
Strand 6
B
162 166parallel
Strand 7
B
208 210parallel
Strand 8
B
230 234parallel
Strand 9
B
7 11parallel
Strand 10
B
7 11first strand
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There are 22 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 11first strand
Strand 2
C
38 43parallel
Strand 3
C
60 64parallel
Strand 4
C
90 93parallel
Strand 5
C
122 127parallel
Strand 6
C
162 166parallel
Strand 7
C
208 210parallel
Strand 8
C
230 234parallel
Strand 9
C
38 43first strand
Strand 10
C
7 11parallel
Strand 11
C
60 64first strand
Strand 12
C
38 43parallel
Strand 13
C
90 93first strand
Strand 14
C
60 64parallel
Strand 15
C
122 127first strand
Strand 16
C
90 93parallel
Strand 17
C
162 166first strand
Strand 18
C
122 127parallel
Strand 19
C
208 210first strand
Strand 20
C
162 166parallel
Strand 21
C
230 234first strand
Strand 22
C
7 11parallel
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