Analysis of interatomic Contacts of Structural Units in PDB entry:
2VEO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VEO entry

There are 2 chains in PDB entry 2VEO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11PRO 440
B
 ALA 11PRO 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2VEO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 50Right-handed alpha
Helix 2
2
A
122 133Right-handed alpha
Helix 3
3
A
151 170Right-handed alpha
Helix 4
4
A
185 197Right-handed alpha
Helix 5
5
A
217 226Right-handed alpha
Helix 6
6
A
231 245Right-handed alpha
Helix 7
7
A
246 255Right-handed alpha
Helix 8
8
A
257 268Right-handed alpha
Helix 9
9
A
273 280Right-handed alpha
Helix 10
10
A
300 308Right-handed alpha
Helix 11
11
A
339 352Right-handed alpha
Helix 12
12
A
365 386Right-handed alpha
Helix 13
13
A
408 413Right-handed alpha
Helix 14
14
A
414 423Right-handed alpha
Helix 15
15
B
45 50Right-handed alpha
Helix 16
16
B
122 133Right-handed alpha
Helix 17
17
B
151 170Right-handed alpha
Helix 18
18
B
185 197Right-handed alpha
Helix 19
19
B
217 226Right-handed alpha
Helix 20
20
B
231 245Right-handed alpha
Helix 21
21
B
246 255Right-handed alpha
Helix 22
22
B
257 268Right-handed alpha
Helix 23
23
B
273 280Right-handed alpha
Helix 24
24
B
300 308Right-handed alpha
Helix 25
25
B
339 352Right-handed alpha
Helix 26
26
B
365 386Right-handed alpha
Helix 27
27
B
408 413Right-handed alpha
Helix 28
28
B
414 423Right-handed alpha
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There are 4 sheets in PDB entry 2VEO. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 42first strand
Strand 2
A
53 63anti-parallel
Strand 3
A
66 77anti-parallel
Strand 4
A
85 91parallel
Strand 5
A
136 141anti-parallel
Strand 6
A
177 183parallel
Strand 7
A
207 213parallel
Strand 8
A
325 332parallel
Strand 9
A
355 361parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 429first strand
Strand 2
A
432 435anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 42first strand
Strand 2
A
53 63anti-parallel
Strand 3
A
66 77anti-parallel
Strand 4
A
85 91parallel
Strand 5
A
136 141anti-parallel
Strand 6
A
177 183parallel
Strand 7
A
207 213parallel
Strand 8
A
325 332parallel
Strand 9
A
355 361parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 429first strand
Strand 2
A
432 435anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il