Analysis of interatomic Contacts of Structural Units in PDB entry:
2VF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VF1 entry

There are 2 chains in PDB entry 2VF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 66THR 590
B
 ASP 66THR 590
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 2VF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
66 71Right-handed 310
Helix 2
2
A
73 81Right-handed alpha
Helix 3
3
A
102 106Right-handed 310
Helix 4
4
A
140 157Right-handed alpha
Helix 5
5
A
164 191Right-handed alpha
Helix 6
6
A
204 210Right-handed alpha
Helix 7
7
A
214 221Right-handed alpha
Helix 8
8
A
221 237Right-handed alpha
Helix 9
9
A
245 255Right-handed alpha
Helix 10
10
A
305 322Right-handed alpha
Helix 11
11
A
325 335Right-handed alpha
Helix 12
12
A
338 341Right-handed 310
Helix 13
13
A
359 369Right-handed alpha
Helix 14
14
A
433 442Right-handed alpha
Helix 15
15
A
488 491Right-handed 310
Helix 16
16
A
514 518Right-handed 310
Helix 17
17
A
522 528Right-handed 310
Helix 18
18
A
563 579Right-handed alpha
Helix 19
19
A
583 587Right-handed 310
Helix 20
20
B
66 71Right-handed 310
Helix 21
21
B
73 81Right-handed alpha
Helix 22
22
B
102 106Right-handed 310
Helix 23
23
B
141 155Right-handed alpha
Helix 24
24
B
164 191Right-handed alpha
Helix 25
25
B
192 194Right-handed 310
Helix 26
26
B
204 210Right-handed alpha
Helix 27
27
B
214 221Right-handed alpha
Helix 28
28
B
221 237Right-handed alpha
Helix 29
29
B
245 255Right-handed alpha
Helix 30
30
B
305 322Right-handed alpha
Helix 31
31
B
323 338Right-handed alpha
Helix 32
32
B
339 341Right-handed 310
Helix 33
33
B
359 369Right-handed alpha
Helix 34
34
B
433 442Right-handed alpha
Helix 35
35
B
522 528Right-handed 310
Helix 36
36
B
563 579Right-handed alpha
Helix 37
37
B
581 585Right-handed 310
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There are 15 sheets in PDB entry 2VF1. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
96 100anti-parallel
Strand 3
B
417 420anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
269 274anti-parallel
Strand 3
A
123 130parallel
Strand 4
A
470 478anti-parallel
Strand 5
A
497 499anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 281first strand
Strand 2
A
290 295anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
400 405anti-parallel
Strand 3
A
460 466anti-parallel
Strand 4
A
446 449anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 389first strand
Strand 2
A
395 396anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 420first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
113 115anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 427first strand
Strand 2
A
558 562anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 482first strand
Strand 2
A
493 494anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 505first strand
Strand 2
A
534 538parallel
Strand 3
A
549 553anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
269 274anti-parallel
Strand 3
B
123 128parallel
Strand 4
B
472 482anti-parallel
Strand 5
B
493 500anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 281first strand
Strand 2
B
290 295anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 380first strand
Strand 2
B
400 405anti-parallel
Strand 3
B
461 466anti-parallel
Strand 4
B
446 449anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 390first strand
Strand 2
B
394 396anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 427first strand
Strand 2
B
558 562anti-parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
503 505first strand
Strand 2
B
534 538parallel
Strand 3
B
549 553anti-parallel
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