Analysis of interatomic Contacts of Structural Units in PDB entry:
2VF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VF5 entry

There is 1 chain in PDB entry 2VF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 GLY 243GLU 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2VF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
250 258Right-handed alpha
Helix 2
2
X
258 266Right-handed alpha
Helix 3
3
X
285 292Right-handed alpha
Helix 4
4
X
301 317Right-handed alpha
Helix 5
5
X
327 331Right-handed alpha
Helix 6
6
X
352 364Right-handed alpha
Helix 7
7
X
379 384Right-handed alpha
Helix 8
8
X
402 422Right-handed alpha
Helix 9
9
X
427 448Right-handed alpha
Helix 10
10
X
450 463Right-handed alpha
Helix 11
11
X
472 474Right-handed 310
Helix 12
12
X
475 491Right-handed alpha
Helix 13
13
X
501 505Right-handed 310
Helix 14
14
X
505 510Right-handed 310
Helix 15
15
X
522 535Right-handed alpha
Helix 16
16
X
536 540Right-handed 310
Helix 17
17
X
550 552Right-handed 310
Helix 18
18
X
568 570Right-handed 310
Helix 19
19
X
571 576Right-handed alpha
Helix 20
20
X
576 592Right-handed alpha
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There are 2 sheets in PDB entry 2VF5. Click on sheet of interest to get list of strands forming it: XA, XB,

There are 5 strands in XA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
322 326first strand
Strand 2
X
294 299parallel
Strand 3
X
341 344parallel
Strand 4
X
369 372parallel
Strand 5
X
387 388parallel
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There are 5 strands in XB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
493 498first strand
Strand 2
X
466 471parallel
Strand 3
X
516 519parallel
Strand 4
X
543 548parallel
Strand 5
X
559 564parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il