Analysis of interatomic Contacts of Structural Units in PDB entry:
2VFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VFJ entry

There are 4 chains in PDB entry 2VFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5GLU 361
B
 LEU 6GLU 361
C
 VAL 5ASN 359
D
 VAL 5ILE 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 2VFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
14 28Right-handed alpha
Helix 3
3
A
42 46Right-handed 310
Helix 4
4
A
57 69Right-handed alpha
Helix 5
5
A
70 80Right-handed alpha
Helix 6
6
A
102 114Right-handed alpha
Helix 7
7
A
120 132Right-handed alpha
Helix 8
8
A
135 149Right-handed alpha
Helix 9
9
A
163 175Right-handed alpha
Helix 10
10
A
192 204Right-handed alpha
Helix 11
11
A
239 243Right-handed 310
Helix 12
12
A
294 297Right-handed 310
Helix 13
13
A
298 307Right-handed alpha
Helix 14
14
A
340 359Right-handed alpha
Helix 15
15
B
9 13Right-handed 310
Helix 16
16
B
14 28Right-handed alpha
Helix 17
17
B
42 46Right-handed 310
Helix 18
18
B
57 69Right-handed alpha
Helix 19
19
B
70 80Right-handed alpha
Helix 20
20
B
102 114Right-handed alpha
Helix 21
21
B
120 132Right-handed alpha
Helix 22
22
B
135 149Right-handed alpha
Helix 23
23
B
163 175Right-handed alpha
Helix 24
24
B
192 204Right-handed alpha
Helix 25
25
B
239 243Right-handed 310
Helix 26
26
B
294 297Right-handed 310
Helix 27
27
B
298 307Right-handed alpha
Helix 28
28
B
340 358Right-handed alpha
Helix 29
29
C
9 13Right-handed 310
Helix 30
30
C
14 28Right-handed alpha
Helix 31
31
C
42 46Right-handed 310
Helix 32
32
C
57 69Right-handed alpha
Helix 33
33
C
70 80Right-handed alpha
Helix 34
34
C
102 114Right-handed alpha
Helix 35
35
C
120 132Right-handed alpha
Helix 36
36
C
135 149Right-handed alpha
Helix 37
37
C
163 175Right-handed alpha
Helix 38
38
C
192 204Right-handed alpha
Helix 39
39
C
239 243Right-handed 310
Helix 40
40
C
294 297Right-handed 310
Helix 41
41
C
298 307Right-handed alpha
Helix 42
42
C
340 358Right-handed alpha
Helix 43
43
D
9 13Right-handed 310
Helix 44
44
D
14 28Right-handed alpha
Helix 45
45
D
42 46Right-handed 310
Helix 46
46
D
57 69Right-handed alpha
Helix 47
47
D
70 80Right-handed alpha
Helix 48
48
D
102 114Right-handed alpha
Helix 49
49
D
120 132Right-handed alpha
Helix 50
50
D
135 149Right-handed alpha
Helix 51
51
D
163 175Right-handed alpha
Helix 52
52
D
192 204Right-handed alpha
Helix 53
53
D
239 243Right-handed 310
Helix 54
54
D
294 297Right-handed 310
Helix 55
55
D
298 307Right-handed alpha
Helix 56
56
D
340 359Right-handed alpha
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There are 12 sheets in PDB entry 2VFJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
39 40anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
256 262anti-parallel
Strand 3
A
248 253anti-parallel
Strand 4
A
207 210parallel
Strand 5
A
231 233anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
321 329anti-parallel
Strand 3
A
309 316anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
39 40anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
256 262anti-parallel
Strand 3
B
248 253anti-parallel
Strand 4
B
207 210parallel
Strand 5
B
231 233anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 274first strand
Strand 2
B
324 329anti-parallel
Strand 3
B
309 313anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 30first strand
Strand 2
C
39 40anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
256 262anti-parallel
Strand 3
C
249 253anti-parallel
Strand 4
C
207 210parallel
Strand 5
C
231 233anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
272 274first strand
Strand 2
C
324 329anti-parallel
Strand 3
C
309 313anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 30first strand
Strand 2
D
39 40anti-parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
256 262anti-parallel
Strand 3
D
248 253anti-parallel
Strand 4
D
207 210parallel
Strand 5
D
231 233anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
272 274first strand
Strand 2
D
321 329anti-parallel
Strand 3
D
309 318anti-parallel
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