Analysis of interatomic Contacts of Structural Units in PDB entry:
2VFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VFM entry

There is 1 chain in PDB entry 2VFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 112LEU 666
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2VFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
HA
A
112 120Right-handed alpha
Helix 2
HB
A
127 129Right-handed 310
Helix 3
HC
A
133 139Right-handed alpha
Helix 4
HD
A
217 221Right-handed alpha
Helix 5
HE
A
237 241Right-handed alpha
Helix 6
HF
A
245 248Right-handed alpha
Helix 7
HG
A
251 253Right-handed 310
Helix 8
HH
A
532 534Right-handed 310
Helix 9
HI
A
610 612Right-handed 310
Helix 10
HJ
A
627 629Right-handed 310
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There are 5 sheets in PDB entry 2VFM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
177 182parallel
Strand 3
A
260 265parallel
Strand 4
A
280 285parallel
Strand 5
A
306 309parallel
Strand 6
A
334 337parallel
Strand 7
A
362 364parallel
Strand 8
A
394 396parallel
Strand 9
A
441 446parallel
Strand 10
A
463 468parallel
Strand 11
A
490 492parallel
Strand 12
A
516 518parallel
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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
143 146parallel
Strand 3
A
166 169parallel
Strand 4
A
189 191parallel
Strand 5
A
271 273parallel
Strand 6
A
291 293parallel
Strand 7
A
320 322parallel
Strand 8
A
348 350parallel
Strand 9
A
380 382parallel
Strand 10
A
427 429parallel
Strand 11
A
449 451parallel
Strand 12
A
471 473parallel
Strand 13
A
497 499parallel
Strand 14
A
522 524parallel
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There are 13 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
172 174parallel
Strand 3
A
194 196parallel
Strand 4
A
276 278parallel
Strand 5
A
296 300parallel
Strand 6
A
325 328parallel
Strand 7
A
353 355parallel
Strand 8
A
385 387parallel
Strand 9
A
432 434parallel
Strand 10
A
454 456parallel
Strand 11
A
476 478parallel
Strand 12
A
502 503parallel
Strand 13
A
527 528parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 562first strand
Strand 2
A
574 580anti-parallel
Strand 3
A
589 597anti-parallel
Strand 4
A
600 608anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 641first strand
Strand 2
A
646 652anti-parallel
Strand 3
A
658 664anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il