Analysis of interatomic Contacts of Structural Units in PDB entry:
2VFU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VFU entry

There is 1 chain in PDB entry 2VFU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4ALA 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2VFU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 35Right-handed alpha
Helix 2
2
A
86 97Right-handed alpha
Helix 3
3
A
111 118Right-handed alpha
Helix 4
4
A
129 132Right-handed 310
Helix 5
5
A
155 159Right-handed 310
Helix 6
6
A
196 205Right-handed alpha
Helix 7
7
A
254 257Right-handed 310
Helix 8
8
A
269 271Right-handed 310
Helix 9
9
A
297 308Right-handed alpha
Helix 10
10
A
308 313Right-handed alpha
Helix 11
11
A
349 365Right-handed alpha
Helix 12
12
A
366 368Right-handed 310
Helix 13
13
A
380 388Right-handed alpha
Helix 14
14
A
390 402Right-handed alpha
Helix 15
15
A
409 417Right-handed alpha
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There are 5 sheets in PDB entry 2VFU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
59 62parallel
Strand 3
A
39 42parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
78 82anti-parallel
Strand 3
A
168 175anti-parallel
Strand 4
A
134 140anti-parallel
Strand 5
A
146 150anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
177 178anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
181 190anti-parallel
Strand 3
A
266 267anti-parallel
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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
181 190anti-parallel
Strand 3
A
221 229anti-parallel
Strand 4
A
209 214anti-parallel
Strand 5
A
316 324anti-parallel
Strand 6
A
339 346anti-parallel
Strand 7
A
287 294anti-parallel
Strand 8
A
370 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il