Analysis of interatomic Contacts of Structural Units in PDB entry:
2VG1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VG1 entry

There are 2 chains in PDB entry 2VG1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29ARG 256
B
 SER 29ARG 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2VG1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 49Right-handed alpha
Helix 2
2
A
54 76Right-handed alpha
Helix 3
3
A
88 92Right-handed 310
Helix 4
4
A
93 112Right-handed alpha
Helix 5
5
A
113 117Right-handed 310
Helix 6
6
A
125 129Right-handed 310
Helix 7
7
A
130 143Right-handed alpha
Helix 8
8
A
159 178Right-handed alpha
Helix 9
9
A
181 189Right-handed alpha
Helix 10
10
A
190 198Right-handed alpha
Helix 11
11
A
237 241Right-handed 310
Helix 12
12
A
242 256Right-handed alpha
Helix 13
13
B
41 49Right-handed alpha
Helix 14
14
B
54 76Right-handed alpha
Helix 15
15
B
88 92Right-handed 310
Helix 16
16
B
93 112Right-handed alpha
Helix 17
17
B
113 117Right-handed 310
Helix 18
18
B
125 129Right-handed 310
Helix 19
19
B
130 143Right-handed alpha
Helix 20
20
B
159 178Right-handed alpha
Helix 21
21
B
181 187Right-handed alpha
Helix 22
22
B
190 196Right-handed alpha
Helix 23
23
B
237 241Right-handed 310
Helix 24
24
B
242 256Right-handed alpha
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There are 2 sheets in PDB entry 2VG1. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
151 158parallel
Strand 3
A
79 86parallel
Strand 4
A
34 38parallel
Strand 5
A
208 211parallel
Strand 6
A
230 233parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
151 158parallel
Strand 3
B
79 86parallel
Strand 4
B
34 38parallel
Strand 5
B
208 211parallel
Strand 6
B
230 233parallel
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