Analysis of interatomic Contacts of Structural Units in PDB entry:
2VG3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VG3 entry

There are 4 chains in PDB entry 2VG3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 13ALA 296
B
 PHE 13ALA 296
C
 PHE 13ALA 296
D
 PRO 14ALA 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2VG3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
77 85Right-handed alpha
Helix 2
2
A
88 111Right-handed alpha
Helix 3
3
A
123 127Right-handed 310
Helix 4
4
A
128 153Right-handed alpha
Helix 5
5
A
167 182Right-handed alpha
Helix 6
6
A
196 214Right-handed alpha
Helix 7
7
A
218 222Right-handed 310
Helix 8
8
A
223 231Right-handed alpha
Helix 9
9
A
270 274Right-handed 310
Helix 10
10
A
275 289Right-handed alpha
Helix 11
11
B
77 85Right-handed alpha
Helix 12
12
B
88 111Right-handed alpha
Helix 13
13
B
123 127Right-handed 310
Helix 14
14
B
128 153Right-handed alpha
Helix 15
15
B
167 182Right-handed alpha
Helix 16
16
B
196 214Right-handed alpha
Helix 17
17
B
218 222Right-handed 310
Helix 18
18
B
223 231Right-handed alpha
Helix 19
19
B
270 274Right-handed 310
Helix 20
20
B
275 289Right-handed alpha
Helix 21
21
C
63 67Right-handed 310
Helix 22
22
C
77 85Right-handed alpha
Helix 23
23
C
88 111Right-handed alpha
Helix 24
24
C
123 127Right-handed 310
Helix 25
25
C
128 153Right-handed alpha
Helix 26
26
C
167 182Right-handed alpha
Helix 27
27
C
196 214Right-handed alpha
Helix 28
28
C
218 222Right-handed 310
Helix 29
29
C
223 230Right-handed alpha
Helix 30
30
C
270 274Right-handed 310
Helix 31
31
C
275 289Right-handed alpha
Helix 32
32
D
63 67Right-handed 310
Helix 33
33
D
77 85Right-handed alpha
Helix 34
34
D
88 111Right-handed alpha
Helix 35
35
D
123 127Right-handed 310
Helix 36
36
D
128 153Right-handed alpha
Helix 37
37
D
167 182Right-handed alpha
Helix 38
38
D
196 214Right-handed alpha
Helix 39
39
D
218 222Right-handed 310
Helix 40
40
D
223 230Right-handed alpha
Helix 41
41
D
270 274Right-handed 310
Helix 42
42
D
275 288Right-handed alpha
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There are 8 sheets in PDB entry 2VG3. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
52 53parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
187 195parallel
Strand 3
A
114 121parallel
Strand 4
A
70 74parallel
Strand 5
A
241 244parallel
Strand 6
A
263 266parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
52 53parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 160first strand
Strand 2
B
187 195parallel
Strand 3
B
114 121parallel
Strand 4
B
70 74parallel
Strand 5
B
241 244parallel
Strand 6
B
263 266parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 26first strand
Strand 2
C
52 53parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 160first strand
Strand 2
C
187 195parallel
Strand 3
C
114 121parallel
Strand 4
C
70 74parallel
Strand 5
C
241 244parallel
Strand 6
C
263 266parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 26first strand
Strand 2
D
52 53parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
155 160first strand
Strand 2
D
187 195parallel
Strand 3
D
114 121parallel
Strand 4
D
70 74parallel
Strand 5
D
241 244parallel
Strand 6
D
263 266parallel
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