Analysis of interatomic Contacts of Structural Units in PDB entry:
2VG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VG5 entry

There are 2 chains in PDB entry 2VG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1ARG 557
B
 ILE 1005GLN 1428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2VG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 45Right-handed alpha
Helix 2
2
A
77 84Right-handed alpha
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
114 118Right-handed 310
Helix 5
5
A
121 126Right-handed alpha
Helix 6
6
A
127 129Right-handed 310
Helix 7
7
A
155 175Right-handed alpha
Helix 8
8
A
194 211Right-handed alpha
Helix 9
9
A
218 222Right-handed 310
Helix 10
10
A
253 268Right-handed alpha
Helix 11
11
A
276 282Right-handed alpha
Helix 12
12
A
296 310Right-handed alpha
Helix 13
13
A
363 384Right-handed alpha
Helix 14
14
A
394 405Right-handed alpha
Helix 15
15
A
475 489Right-handed alpha
Helix 16
16
A
499 508Right-handed alpha
Helix 17
17
A
515 528Right-handed alpha
Helix 18
18
A
544 553Right-handed alpha
Helix 19
19
B
1027 1044Right-handed alpha
Helix 20
20
B
1077 1083Right-handed alpha
Helix 21
21
B
1084 1089Right-handed alpha
Helix 22
22
B
1099 1103Right-handed 310
Helix 23
23
B
1112 1115Right-handed 310
Helix 24
24
B
1121 1129Right-handed 310
Helix 25
25
B
1134 1138Right-handed 310
Helix 26
26
B
1154 1175Right-handed alpha
Helix 27
27
B
1194 1211Right-handed alpha
Helix 28
28
B
1235 1239Right-handed 310
Helix 29
29
B
1253 1269Right-handed alpha
Helix 30
30
B
1296 1309Right-handed alpha
Helix 31
31
B
1363 1384Right-handed alpha
Helix 32
32
B
1394 1402Right-handed alpha
Helix 33
33
B
1403 1405Right-handed 310
Helix 34
34
B
1420 1427Right-handed alpha
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There are 12 sheets in PDB entry 2VG5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
130 132anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
72 75anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
179 183anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
239 241anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 354first strand
Strand 2
A
337 342anti-parallel
Strand 3
A
326 331anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
512 513anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
453 459anti-parallel
Strand 3
A
439 444anti-parallel
Strand 4
A
492 497parallel
Strand 5
A
530 535parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
453 459anti-parallel
Strand 3
A
468 469anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1047 1049first strand
Strand 2
B
1142 1146anti-parallel
Strand 3
B
1130 1132anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1060 1064first strand
Strand 2
B
1071 1075anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1179 1182first strand
Strand 2
B
1186 1191anti-parallel
Strand 3
B
1105 1110anti-parallel
Strand 4
B
1233 1234anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1347 1354first strand
Strand 2
B
1337 1344anti-parallel
Strand 3
B
1326 1331anti-parallel
Strand 4
B
1388 1391parallel
Strand 5
B
1414 1416parallel
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