Analysis of interatomic Contacts of Structural Units in PDB entry:
2VG6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VG6 entry

There are 2 chains in PDB entry 2VG6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1LEU 551
B
 ILE 1005GLN 1428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2VG6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 45Right-handed alpha
Helix 2
2
A
77 83Right-handed alpha
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
114 118Right-handed 310
Helix 5
5
A
121 129Right-handed 310
Helix 6
6
A
155 175Right-handed alpha
Helix 7
7
A
194 212Right-handed alpha
Helix 8
8
A
253 268Right-handed alpha
Helix 9
9
A
276 282Right-handed alpha
Helix 10
10
A
296 312Right-handed alpha
Helix 11
11
A
363 384Right-handed alpha
Helix 12
12
A
394 405Right-handed alpha
Helix 13
13
A
473 488Right-handed alpha
Helix 14
14
A
499 507Right-handed alpha
Helix 15
15
A
515 528Right-handed alpha
Helix 16
16
A
544 549Right-handed alpha
Helix 17
17
B
1027 1044Right-handed alpha
Helix 18
18
B
1077 1085Right-handed alpha
Helix 19
19
B
1085 1090Right-handed alpha
Helix 20
20
B
1099 1103Right-handed 310
Helix 21
21
B
1121 1129Right-handed 310
Helix 22
22
B
1134 1138Right-handed 310
Helix 23
23
B
1154 1175Right-handed alpha
Helix 24
24
B
1194 1213Right-handed alpha
Helix 25
25
B
1235 1239Right-handed 310
Helix 26
26
B
1253 1270Right-handed alpha
Helix 27
27
B
1299 1311Right-handed alpha
Helix 28
28
B
1363 1383Right-handed alpha
Helix 29
29
B
1394 1402Right-handed alpha
Helix 30
30
B
1403 1406Right-handed 310
Helix 31
31
B
1420 1427Right-handed alpha
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There are 11 sheets in PDB entry 2VG6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
143 146anti-parallel
Strand 3
A
130 131anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
70 74anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
179 182anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
238 241anti-parallel
Strand 4
A
316 317anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
337 342anti-parallel
Strand 3
A
326 331anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
337 342anti-parallel
Strand 3
A
353 354anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 469first strand
Strand 2
A
453 457anti-parallel
Strand 3
A
439 444anti-parallel
Strand 4
A
492 497parallel
Strand 5
A
530 535parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1047 1049first strand
Strand 2
B
1143 1146anti-parallel
Strand 3
B
1130 1131anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1060 1064first strand
Strand 2
B
1071 1075anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1179 1183first strand
Strand 2
B
1186 1191anti-parallel
Strand 3
B
1105 1110anti-parallel
Strand 4
B
1233 1234anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1348 1354first strand
Strand 2
B
1336 1342anti-parallel
Strand 3
B
1326 1332anti-parallel
Strand 4
B
1388 1391parallel
Strand 5
B
1413 1416parallel
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