Analysis of interatomic Contacts of Structural Units in PDB entry:
2VGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VGI entry

There are 4 chains in PDB entry 2VGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 57ILE 573
B
 GLN 57ILE 573
C
 GLN 57ILE 573
D
 GLN 57ILE 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 91 helices in PDB entry 2VGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 65Right-handed alpha
Helix 2
2
A
68 75Right-handed alpha
Helix 3
3
A
95 99Right-handed 310
Helix 4
4
A
100 110Right-handed alpha
Helix 5
5
A
123 140Right-handed alpha
Helix 6
6
A
204 209Right-handed 310
Helix 7
7
A
265 279Right-handed alpha
Helix 8
8
A
291 302Right-handed alpha
Helix 9
9
A
303 306Right-handed 310
Helix 10
10
A
316 322Right-handed alpha
Helix 11
11
A
322 330Right-handed alpha
Helix 12
12
A
336 344Right-handed alpha
Helix 13
13
A
348 364Right-handed alpha
Helix 14
14
A
374 379Right-handed 310
Helix 15
15
A
384 398Right-handed alpha
Helix 16
16
A
405 410Right-handed alpha
Helix 17
17
A
413 431Right-handed alpha
Helix 18
18
A
433 445Right-handed alpha
Helix 19
19
A
450 467Right-handed alpha
Helix 20
20
A
478 486Right-handed alpha
Helix 21
21
A
501 506Right-handed alpha
Helix 22
22
A
507 509Right-handed 310
Helix 23
23
A
524 544Right-handed alpha
Helix 24
24
B
60 65Right-handed alpha
Helix 25
25
B
68 76Right-handed alpha
Helix 26
26
B
95 99Right-handed 310
Helix 27
27
B
100 110Right-handed alpha
Helix 28
28
B
123 140Right-handed alpha
Helix 29
29
B
204 208Right-handed 310
Helix 30
30
B
220 223Right-handed alpha
Helix 31
31
B
265 279Right-handed alpha
Helix 32
32
B
291 302Right-handed alpha
Helix 33
33
B
303 306Right-handed 310
Helix 34
34
B
316 330Right-handed alpha
Helix 35
35
B
337 344Right-handed alpha
Helix 36
36
B
348 364Right-handed alpha
Helix 37
37
B
374 379Right-handed 310
Helix 38
38
B
384 398Right-handed alpha
Helix 39
39
B
405 410Right-handed alpha
Helix 40
40
B
413 431Right-handed alpha
Helix 41
41
B
433 445Right-handed alpha
Helix 42
42
B
450 467Right-handed alpha
Helix 43
43
B
478 486Right-handed alpha
Helix 44
44
B
501 506Right-handed alpha
Helix 45
45
B
507 509Right-handed 310
Helix 46
46
B
524 544Right-handed alpha
Helix 47
47
C
60 65Right-handed alpha
Helix 48
48
C
68 75Right-handed alpha
Helix 49
49
C
95 99Right-handed 310
Helix 50
50
C
100 111Right-handed alpha
Helix 51
51
C
123 140Right-handed alpha
Helix 52
52
C
204 209Right-handed 310
Helix 53
53
C
265 279Right-handed alpha
Helix 54
54
C
290 302Right-handed alpha
Helix 55
55
C
303 306Right-handed 310
Helix 56
56
C
316 330Right-handed alpha
Helix 57
57
C
337 344Right-handed alpha
Helix 58
58
C
348 364Right-handed alpha
Helix 59
59
C
374 379Right-handed 310
Helix 60
60
C
384 398Right-handed alpha
Helix 61
61
C
405 410Right-handed alpha
Helix 62
62
C
413 431Right-handed alpha
Helix 63
63
C
433 445Right-handed alpha
Helix 64
64
C
450 467Right-handed alpha
Helix 65
65
C
478 486Right-handed alpha
Helix 66
66
C
501 506Right-handed alpha
Helix 67
67
C
507 509Right-handed 310
Helix 68
68
C
524 543Right-handed alpha
Helix 69
69
D
60 65Right-handed alpha
Helix 70
70
D
68 75Right-handed alpha
Helix 71
71
D
95 99Right-handed 310
Helix 72
72
D
100 110Right-handed alpha
Helix 73
73
D
123 140Right-handed alpha
Helix 74
74
D
188 193Right-handed 310
Helix 75
75
D
206 211Right-handed alpha
Helix 76
76
D
265 279Right-handed alpha
Helix 77
77
D
290 302Right-handed alpha
Helix 78
78
D
303 306Right-handed 310
Helix 79
79
D
316 330Right-handed alpha
Helix 80
80
D
337 344Right-handed alpha
Helix 81
81
D
348 364Right-handed alpha
Helix 82
82
D
374 379Right-handed 310
Helix 83
83
D
384 398Right-handed alpha
Helix 84
84
D
405 410Right-handed alpha
Helix 85
85
D
413 431Right-handed alpha
Helix 86
86
D
433 445Right-handed alpha
Helix 87
87
D
450 467Right-handed alpha
Helix 88
88
D
478 486Right-handed alpha
Helix 89
89
D
501 506Right-handed alpha
Helix 90
90
D
507 509Right-handed 310
Helix 91
91
D
524 543Right-handed alpha
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There are 13 sheets in PDB entry 2VGI. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, CC, DA, DB, C,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
401 404parallel
Strand 3
A
367 369parallel
Strand 4
A
332 335parallel
Strand 5
A
309 314parallel
Strand 6
A
282 288parallel
Strand 7
A
152 156parallel
Strand 8
A
114 118parallel
Strand 9
A
89 93parallel
Strand 10
A
89 93first strand
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
244 246anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
182 186parallel
Strand 3
A
236 240anti-parallel
Strand 4
A
224 231anti-parallel
Strand 5
A
216 219anti-parallel
Strand 6
A
252 253anti-parallel
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There are 10 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 516first strand
Strand 2
A
492 497parallel
Strand 3
A
470 474parallel
Strand 4
A
551 557parallel
Strand 5
A
565 572anti-parallel
Strand 6
B
565 572anti-parallel
Strand 7
B
551 557anti-parallel
Strand 8
B
470 474parallel
Strand 9
B
492 497parallel
Strand 10
B
512 516parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 93first strand
Strand 2
B
401 404parallel
Strand 3
B
367 370parallel
Strand 4
B
332 336parallel
Strand 5
B
309 314parallel
Strand 6
B
282 285parallel
Strand 7
B
152 156parallel
Strand 8
B
114 118parallel
Strand 9
B
89 93parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
199 200parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
218 219anti-parallel
Strand 3
B
252 253anti-parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 93first strand
Strand 2
C
401 404parallel
Strand 3
C
367 370parallel
Strand 4
C
332 336parallel
Strand 5
C
309 314parallel
Strand 6
C
282 285parallel
Strand 7
C
152 156parallel
Strand 8
C
114 118parallel
Strand 9
C
89 93parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 201first strand
Strand 2
C
182 186parallel
Strand 3
C
235 242anti-parallel
Strand 4
C
224 232anti-parallel
Strand 5
C
216 219anti-parallel
Strand 6
C
252 253anti-parallel
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There are 10 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
512 516first strand
Strand 2
C
492 497parallel
Strand 3
C
470 474parallel
Strand 4
C
551 557parallel
Strand 5
C
565 572anti-parallel
Strand 6
D
565 572anti-parallel
Strand 7
D
551 557anti-parallel
Strand 8
D
470 474parallel
Strand 9
D
492 497parallel
Strand 10
D
512 516parallel
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There are 17 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 93first strand
Strand 2
D
401 404parallel
Strand 3
D
367 370parallel
Strand 4
D
114 118first strand
Strand 5
D
89 93parallel
Strand 6
D
152 156first strand
Strand 7
D
114 118parallel
Strand 8
D
282 285first strand
Strand 9
D
152 156parallel
Strand 10
D
309 314first strand
Strand 11
D
282 285parallel
Strand 12
D
332 336first strand
Strand 13
D
309 314parallel
Strand 14
D
367 370first strand
Strand 15
D
332 336parallel
Strand 16
D
401 404first strand
Strand 17
D
89 93parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
176 177first strand
Strand 2
D
244 245anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
199 201first strand
Strand 2
D
182 186parallel
Strand 3
D
236 242anti-parallel
Strand 4
D
224 231anti-parallel
Strand 5
D
216 219anti-parallel
Strand 6
D
252 253anti-parallel
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